<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07092

Description "Bm13695, isoform d"
SequenceMPLGLHASPDGQKLIYCNGNSVYIRSIQNPKECEIYTEHANPTTVAKYSPSGFYIASGDQSGKIRIWDATQPSHILKAEYPILSGPIRDIAWSDDSKRIAVVGEGRERFGHVFLFDTGTSNGNLSGQSRTMSSIDFRPARPYRLVSGSEDNTVALFEGPPFKFLTLFHEHTRFVYCVRYNADSTLFASSGADGKVILYEGTTGQKEGELMDDQCKGVAHAGSVFALCWSPDGQRIATASGDKTIKIWDVSSKKLEKTFVIGKNVDDQQLSIIWTKVFLAGVSLSGFINILDLESGSVSKVLKGHNKPITALTVCSEKALAFTADFEGNITRWCLNSGDSERLLPAVHSSQVSDMCLSPNGNLVSIGWDDSIAFTSFPGSLDNVQSNKVKLSSQPRQVALGSSGKIAVVACQKSVTIFSDGKQMVLQNIEYEASCVAVAPDSRLTAVGSQDGKVHIYELNGNQMKEIKTISQTGSITSLSWSPNGSFLVATDANRKVIPYSVDNDYKCVTEKDWTFHSARVSCSAWSPDSRFVATGGIDTNVIVWDLKHSGEHPIIIKGAHTMSPINGIDWLGSNRIITVGQDSVLKIWTVNV
Length592
PositionTail
OrganismBrugia malayi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.08
Grand average of hydropathy-0.172
Instability index33.81
Isoelectric point6.40
Molecular weight64388.95
Publications
PubMed=17885136

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07092
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     213.80|      40|      40|     404|     443|       1
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  206-  247 (50.21/31.46)	EGEL.M.ddqCKGVAHAG..............SV..FAlcW..SPDGQ.....R.IAT..ASGDKT.IKIW.
  419-  457 (45.23/27.54)	DGKQ.MV...LQNIEYEA..............SC..VA..V..APDSRL.........taVGSQDGkVHIYE
  459-  500 (44.01/26.58)	NGNQ.MK..eIKTISQTG..............SI..TS..LswSPNGSF.....lVAT..DANRK..VIPYS
  504-  545 (41.65/24.72)	DYK...............cvtekdwtfhsarvSC..SA..W..SPDSRF......VAT..GGIDTN.VIVWD
  549-  588 (32.70/17.68)	SGEHpII...IKGAHTMS..............PIngID..W........lgsnR.IIT..VGQDSV.LKIW.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.04|      40|      40|     269|     308|       2
---------------------------------------------------------------------------
  269-  303 (48.66/33.37)	................LSIIWTKVFLAGVSLSGFINILD.LESGSVSKVLKG
  304-  345 (60.32/43.34)	HNKPI.........taLTVCSEKALAFTADFEGNITRWC.LNSGDSERLLPA
  347-  388 (29.06/16.63)	HSSQVsdmclspngnlVSIGWD....DSIAFTSFPGSLDnVQSNKV......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.15|      13|      40|     146|     158|       4
---------------------------------------------------------------------------
  146-  158 (23.02/13.76)	SGSEDNTVALFEG
  188-  200 (23.13/13.85)	SSGADGKVILYEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.54|      25|     339|      47|      73|       6
---------------------------------------------------------------------------
   47-   73 (39.08/32.02)	KYSPSGFYIASGdQSGKIRIWdATQPS
  389-  413 (43.46/25.73)	KLSSQPRQVALG.SSGKIAVV.ACQKS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07092 with Med16 domain of Kingdom Metazoa
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