<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07090

Description Uncharacterized protein
SequenceMEKEDIMERQEQKPVMNSAQCDKYSAVDLSLEEVEEEIRLEKIRQTSLKFSWDYLSQLLRRNLMEKRFVLSADDKEDLMQAAADMRKYMPSDSDRDLSTHLRHLAESLSSDFQAHPGYYKIRNADFSLEITVSLDGQQITSCSVSWFGERAVEAQALRLYVSRNRWDLIHTALTAMFHLVPSDLSRDEKIYCLRSLEYAEKDLLNMSGSAPSIFEQINGGILGLCKPRTESTPFTIYPFVEPVIFLDAASGGIISPTDEQVLYDVEPYLQLCVVSSSTPNFFSDTTLFAHGEWRNAVSGRQLPAAFCLRFSRPIIFSSAAIKKLSKIASVQLNVEGSYNLYQYLLNENEECHDLFVRLPGCSTQHYIFDDSMKSSQEDGILRQIPFAHLQDVVFLVSIIRTQLAHNAFFESLVRAHSRSACVDENVVDIHIASSYIDCFDLQFYLKKNFFIARVAVSPSNINVSLECVINGAVLPESQHATAILAKSWSLAVMMRSVLRRGGAISLAALEKPFVMSENVDNNCDVKISQSWLFVPNITDNSINYNKTEHEYVVDERISLNCSCDSNALGRQSPLSLLALFKELEKIEELIPPQKPMNGAQQCTAPPRNEMLAPRTSRIHSENTMTINAFSVLDAICDMAASIDDGESNVSEHSSHSSIVERCSPSTNENQRLRPQIPPQSPSPASERYRASQAGNFSQLSPLDIARQRLAQQAPMSNPTDIFEFDDPPRMNSAGSMGTPAQQFHFPEAGQSPYPFAAVQSTRGPLSAQPTLKRRGRGRKAGNVGDRMLDPARPILDQNTGLMFRGMNIPTRKPRGTSTARRPRRPRKAAHMPASPAHSHQFALNRPMLQRSFSEMPVYPSQMPPVSLSQENRSEASEFDGTEESSDDETDPPPPVCTTAIPQPSSQLTVSSSATVPQTTVVGNLSSSSATLPMVNKCSSLTTASCLPSIPSSAPAAELTPPTSSSPTSTSNSSMQSAALLAHKARKGSLEAVVGKLHCKTAPASSSSSTTSNPYLASDLYDDESEPVSKPPEPVPAKRDSPSLSTSSPGARMSPNLAKMNAEQPGYGSELKIMIKLKQQASTRPSTGPSQSSSGGVPPSMRLVGQPPSSSRSKEEKALLRQKQLKEKNRSAPDERARKAGKRERKGELSSSSSKKLKLDRPLSEQKTATISPKVEFPQALAFASLKNFKIPKVMENEKCESPTPTTTTTPAVATPSSSGAHLNVGQSLSSSTMQVVSSTSLSAATTATTVTATSSSSSAGTSSIFPPKPKSILKSPAEPPPSLFRGMGGMPPMLPGRRPLLPDPRNVMHHPPRNQFRPLVALPRMIPSVLSGANFMPPPSSSGRWMALAPQRQPSPRSSPSEQSAPSSGLSETATAMSKMQDSPTEALKIVADEE
Length1395
PositionMiddle
OrganismBrugia malayi (Filarial nematode worm)
KingdomMetazoa
Lineage
Aromaticity0.06
Grand average of hydropathy-0.439
Instability index66.53
Isoelectric point7.92
Molecular weight152419.65
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07090
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     583.87|      79|      84|     678|     756|       1
---------------------------------------------------------------------------
  678-  740 (98.10/37.75)	..................................P..Q..S..P....SPA.SERYRAS....QA...G.NFSQLSPLDIARQR.L.AQQA.....P.......MSNP...TDIFEFDD.......PPR.MNSAGSMGT....PA
  741-  826 (83.56/31.01)	QQFHFPEAGQS.PYPFA..........avqstrgP..L..S..A....QPTlKRRGRGR....KA...G.NVGD.RMLDPARPI.L.DQNTglmfrG.......MNIP...T......R.......KPRgTSTARRPRR....PR
  827-  904 (71.28/25.31)	KAAHMPASPAH.SHQFAlnrpmlqrsfsempvypS..Q..M..P.....PV.S....LS....QE.....NRSEASEFDGTEES.S.DD..........................ETDP.......PPP.VCTT.AIPQ....PS
  905-  948 (36.78/ 9.32)	SQLTVSSSATV.PQT..................................................tvvG.NLSSSS...........A.TL.....P.......M.........................VNKCSSLTTasclPS
  949- 1036 (51.55/16.17)	IPSSAPAAELT.P.P....................tsS..S..P....TST.SNSSMQS....AA.llA.HKARKGSLEAVVGK.LhCKTA.....PassssstTSNPylaSDL..YDDesepvskPPE........PV....PA
 1037- 1108 (77.32/28.11)	KR..........DSPSL................sT..S..S..PgarmSPN.LAKMNAE....QP...G.YGSELKIM.IKLKQ.Q.ASTR.....P.......STGP...SQSSSGGV.......PPS.MRLVGQ..P....PS
 1120- 1190 (53.86/17.24)	RQKQLKEKNRSaP.......................................DERARKAgkreRK...G.ELSSSSSKKLKLDRpL.SEQK.....T.......ATIS...PKV.EF.........PQA.LAFASLKNF....KI
 1191- 1264 (63.25/21.59)	PKVMENEKCES.PTP.......................ttT..T....TPA.VATPSSS....GA...HlNVGQ..SLSSSTMQ.V.VSST.....S.......LSAA...TTATTVTA.......TSS.SSSAGTSSI......
 1265- 1313 (48.16/14.60)	.............FPPK.................P..K..SilK....SPA.EP..PPS....LF...R.GMGGMPPMLPGRRP.L..................LPDP...RNVMH..H.......PPR................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.76|      57|      90|      46|     106|       2
---------------------------------------------------------------------------
   46-  106 (87.30/73.57)	TSLKFSWdYLSQLLRRNLMekRFVLSaDDKEDLMQAA.ADMRKYMPSDSDRDLSTH.LRHL..AE
  140-  200 (87.45/58.30)	TSCSVSW.FGERAVEAQAL..RLYVS.RNRWDLIHTAlTAMFHLVPSDLSRDEKIYcLRSLeyAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.26|      17|      94|     419|     436|       5
---------------------------------------------------------------------------
  419-  436 (26.18/24.40)	SACVDENvVDIHIASSYI
  516-  532 (32.08/24.39)	SENVDNN.CDVKISQSWL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.83|      26|      26|    1331|    1356|       7
---------------------------------------------------------------------------
 1331- 1356 (51.54/22.71)	SGANFMPPPSSSGRWMALAPQR.QPSP
 1358- 1384 (39.29/15.56)	SSPSEQSAPSSGLSETATAMSKmQDSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.97|      19|     579|       1|      21|       8
---------------------------------------------------------------------------
    1-   21 (31.10/22.90)	MEK.EDIMerQEQKPVMNSAQC
  583-  602 (31.87/17.11)	LEKiEELI..PPQKPMNGAQQC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07090 with Med1 domain of Kingdom Metazoa
Unable to open file!