<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07089

Description Uncharacterized protein
SequenceLLSNKDDPRYIHYERILSSIFMIACNEGVLPLSDCCELLILCTNFSLTTPMDSRKFEYMQKNLHLIDYKGLRNILKLLVVERMQEMLLTLIDRQLNLLPCIFTITELHRVSNNSRAFLLPRVAKKFNDMFISFRPLTEMVTIIGRSWLYPIAAHISFPVSTPSWKLEVTTTRLHQRAHLPYKSELFAPQSFLLYTLLRQPRGKDTISVKKRSCMLFVLFPSVILFIYFIQLSETVYRKGRDELMWVILQYVAVYIDRVSNEEMVRVTWSGADTDPLLFVRFLVPAILPKPSESLWRQIQFLQERTADSDPNIQNVADHNAVLAAVANALKFHYKLHIYVFTEWFFFKQFPELSYREMEAKMRREMQIELGMRPIEQSTVNPELHMPIYYGNIMERILPVRNNQICFTPPQKFRYYRRKFGYDNLSDFEKFLRDGKYALLTPSFISDNHQLSLPSQFCQALVDRILQASNYAHQPPAFVYKDWRFAEMPPAGQALTGACIELLASPHAPVITAHALIDLVFIRPLHQPFVFLIMFALILTALPVSFQQVFYDHIVSVLDSEALHGDPSVCFGSLESECLLLTENQLLTNLALGHAYLQHCNTVRIHVYKMTVKVNERVGLLKYEDSICDFLYHMKYMYVGDFVKNEAEQAIQRLSPSMRNKLKYISHTQMNTSSWYWGNMSWKDAEKVLMSQLPGTYLVRDSASDRYIFTISYRTKHSVHHTRLAQHGGNFCLGGNLIL
Length738
PositionTail
OrganismBrugia timori
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.12
Grand average of hydropathy-0.028
Instability index48.44
Isoelectric point8.71
Molecular weight85914.09
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07089
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.61|      15|      32|      95|     126|       1
---------------------------------------------------------------------------
   95-  120 (13.54/46.34)	LnllpciftiTELhrVSNNSRAFLLP
  136-  150 (29.07/12.89)	L.........TEM..VTIIGRSWLYP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.08|      32|      32|     429|     460|       2
---------------------------------------------------------------------------
  429-  460 (56.91/33.66)	KFLRDGKYALLTPSFISDNHQ............LS.LPSQFCQAL
  463-  494 (51.24/29.63)	RILQASNYAHQPPAFVYKDWR............FAeMPPA.GQAL
  513-  547 (18.93/ 6.67)	.......HALIDLVFIRPLHQpfvflimfalilTA.LPVSFQQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.66|      28|      28|     214|     241|       3
---------------------------------------------------------------------------
  185-  212 (17.24/ 8.25)	....LFaPqSFLLYTLLRQprGKD..TISVKKRS
  214-  241 (47.84/39.00)	MLFVLF.P.SVILFIYFIQ..LSE..TVYRKGRD
  243-  272 (39.57/30.69)	LMWVIL.Q.YVAVYIDRVS..NEEmvRVTWSGAD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07089 with Med23 domain of Kingdom Metazoa
Unable to open file!