<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07084

Description Uncharacterized protein
SequenceMEKEDIMERQEQKPVMNSAQCDKYSAVDLSLEEVEEEIRLEKIRQTSLKFSWDYLSQLLRRNLMEKRFVLSADDKEDLMQAAADMRKYMPSDSDRDLSTHLRHLAESLSSDFQAHPGYYKIRNADFSLEITVSLDGQQITSCSVSWFGERAVEAQALRLYVSRNRWDLIHTALTAMFHLVPSDLSRDEKIYCLRSLEYAEKDLLNMSGSAPSIFEQINGGILGLCKPRTESTPFTIYPFVEPVIFLDAASGGIISPTDEQGNSERLLRCILDHPFSDIISEIDTISQLIVSVLYDVEPYLQLCVVSSSTPNFFSDTTLFAHGEWRNAVSGRQLPAAFCLRFSRPIIFSSAAIKKLSKIASVQLNVEGSYNLYQYLLNENEECHDLFVRLPGCSTQHYIFDDSMKSSQEDGILRQILFAHLQDVVFLVSIIRTQLAHNAFFESLVRAHSRSACVDENVVDIHIASSYIDCFDLQFYLKKNFFIARVAVSPSNINVSLECVINGAVLPESQHATAILAKSWSLAVMMRSVLRRGGAISLAALEKPFVMSENVDNNCDVKISQSWLFVPNITDNSINYNKTEHEYVVDERISLNCSCDSNALGRQSPLSLLALFKELEKIEELIPPQKPMNGAQQCTAPPRNEMLAPRTSRIHSENTMTINAFSVLDAICDMAASIDDGESNVSEHSSHSSIVERCSPSTNEASIFFQRLRPQIPPQSPSPASERYRASQAGNFSQLSPLDIARQRLANDGSLFQQQAPMSNPTDIFEFDDPPRMNSAGSMGTPAQQFHFPEAGQSPYPFAAVQSTRGPLSAQPTLKRRGRGRKAGNVGDRMLDPARPILDQNTGLMFRGMNIPTRKPRGTSTARRPRRPRKAAHMPASPAHSHQFALNRPMLQRSFSEMPVYPSQMPPVSLSQENRSEASEFDGTEESSDDETDPPPPVCTTAIPQPSSQLTVSSSAPVPQTTVVGNLSSSSATLPMVNKCSSLTTASCLPSIPSSAPATELTPPTSSSPTSTSNSSMQSAALLAHKARKGSLEAVVGKLHCKTAPASSSSSTTSNPYLASDLYDDESEPVSKPPEPVPAKRDSPSLSTSSPGARMSPNLAKMNAEQSGYGSELKIMIKLKQQASTRPSTGPSQSSSGGVPPSMRLVGQPPSSSRSKEEKALLRQKQLKEKNRSAPDERARKAGKRERKGELSSSSSKKLKLDRPLSEQKTATISPKVEFPQALAFASLKNFKIPKVMENEKCESPTPTTTTTPAVATPSSSGAHLNVGQSLSSSAMQVVSSTSLSAATTATTVTATSSSSSAGTSSIFPPKPKSILKSPAEPPPSLFRGMGGMPPMLPGRRPLLPDPRNVMHHPPRPLVALPRMIPSVLSGANFMPPPSSSGRWMALAPQRQPSPRSSPSEQSAPSSGLSETATAMSKMQDSPTEALKIVADEE
Length1433
PositionMiddle
OrganismBrugia pahangi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.06
Grand average of hydropathy-0.405
Instability index66.58
Isoelectric point6.98
Molecular weight156556.33
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07084
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     658.27|      88|      91|     691|     778|       1
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  604-  732 (94.34/33.93)	PLSLL....ALFKE..L.EKIEELI..P.PQKP.......MNGA...Q...QCTAPPrnemlaprtsRIHSENTMtinafsvldaicdmaasiddgesnvsehsshssivER..CSPSTNEASIF..FQRLRP.Q...IPPQSPS.......PA.SERYRAS........QAGNFS
  733-  826 (111.28/41.52)	QLSPL....DIARQ.RL.ANDGSLF..Q.QQAP.......MSNP...TDIFEFDDPP..........RMNSAGSM..............................gtpaqQF..HFPEAGQSPYP..FAAVQS.T...RGPLSAQ.......PTlKRRGRGR........KAGNVG
  827-  930 (77.80/26.52)	D.RML....DPARP.ILdQNTGLMF..RgMNIP.......TRKP...RGTSTARRPR..........RPRKAAHM.......................paspahshqfalNRpmLQRSFSEMPVY..PSQMPPvS...LSQENRS.......EA.SEFDGTE........ESSDDE
  931- 1021 (72.28/24.05)	TDPPP....PVCTT.AI.PQPSSQLtvS.SSAP.......VPQT...TVVGNLS...............SSSA................................tlpmvNK..CS.SLTTASCLpsIPSSAP.AtelTPPTSSS.......PT.STSNSSM........QSAAL.
 1022- 1110 (64.58/20.60)	.LA......HKARKgSLeAVVGKLH..C.KTAPassssstTSNPylaSDLY..DDES..........EPVSKPPE...............................pvpaKR..DSPSLSTSS................PGARMS.......PN.LAKMNAE........QSGYGS
 1111- 1225 (63.13/19.95)	ELKIMiklkQQAST.RP.STGPS......QSSS.......GGVP...PSMRLVGQPP..........SSSRSKEE.......................kallrqkqlkekNR..SAPDERARKA...GKRERK.G...ELSSSSSkklkldrPL.SEQKTATispkvefpQALAFA
 1226- 1331 (71.60/23.74)	SLKNF....KIPK..VM.ENEKCES..P.TPTT.......TTTP...AVATPSSSGA..........HLNVGQSL...........sssamqvvsstslsaattattvtaTS..SSSSAGTSSIF..PPK..P.K...SILKSPA......ePP.PSLFR.G........MGG...
 1332- 1406 (103.26/37.93)	.MPPM....LPGRR.PL.LPDPRNV..M.HHPP.........RP...LVALPRMIPS..........VLSGANFM...................................P....PPSS...SGR..WMALAP.Q......RQPS.......PR.SS..PSE........QSAPSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.71|      22|      95|      85|     106|       2
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   85-  106 (41.92/26.34)	MRKYMPSDSDRDLSTH.LRHL..AE
  176-  200 (30.78/17.25)	MFHLVPSDLSRDEKIYcLRSLeyAE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.49|      41|      96|     424|     467|       3
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  424-  467 (59.63/44.84)	VFLVSIIRTQLAHNafFESLVRAHSRSACVDENvVDIHIASSYI
  523-  563 (70.86/42.52)	VMMRSVLRRGGAIS..LAALEKPFVMSENVDNN.CDVKISQSWL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.55|      22|      95|      28|      52|       4
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   28-   52 (32.64/27.29)	DLSLEEVeeeIRLEKIRQTSLKFSW
  125-  146 (39.91/25.04)	DFSLEIT...VSLDGQQITSCSVSW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.63|      21|      74|     279|     300|       5
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  279-  300 (29.97/28.23)	ISEIDTIsQLIVSVLYDVEPYL
  355-  375 (34.65/27.15)	LSKIASV.QLNVEGSYNLYQYL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07084 with Med1 domain of Kingdom Metazoa
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