<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07079

Description Uncharacterized protein
SequenceMELVTIVHEASLQWRQEYERVVDAILYYAHSAGVLSINMCVEGLALTADFTLRTIMDPQKWTFIDENIPLMDYKGVRSLFKCLIYQQFNSIPAQLSPEQRRQLLPAERILLKILDPDLNVIPPIFTLTELSRGILKRAYMFPRLAHRLSELIMYFRAVAELSYVIGRCFLFPLPAHPSFAASAASCRIDHLTTQISHRAPYLPYKAELRAPQTYLLYMVIRQPRGKEVLSGLLRQVTHGRTQWDEILSVLISETMAEVQKLPDDVEIPRYQWENLMSIIIDDVIWTGASDHPSQLVRFLAAACMWNILDGSEGLPPPSGCLANQIEFVRSNTGPPDEAMQAVLDNAFRHESPVSRTVHAIFQQRLDGQPTEEPHILPYGRTANNKLEAFDMQFLDSLTLRAKINLLLSTCFVSLHKVDRLPSPACVETCARILTSIEFDYGLTNFIAILNRSITAALSPGPADGLNLKDQCHILLDILCYRLPSIPMNFRTSMSHSHDPSPAGLRLCMTIHSAMAQQMIRVLNMMVFHRHVMTFDRLLLSLVLHPATDHASQIAMVIVQKFPEMTFAEMAIRPPMMAEMITPRAHYPIYYGSLIERLLPVKSVLQFDLFLKAFLQPFAFCHFFISYPITFLYTILFCMHEQLGHHPRARQFVLAILCQGDQSSLTQSFINDNHQRVYSFEDLVYELADRIITCSEFILTPPPYVASDWRFAEYPPAAQALYLACIELLASPHSPEHIVPAMINLLVSSRAQPRRPYLMLNAIALLLTALPEAYCRMLQNEFLAVIDSGVLADMTFEEIVFDEFEERQLLQMASRPLIVNVVAQAYWYHSNLSSLSKLISTFAGEACSRANTENDLWYALRLVVPLLQRCYDWREKVKHEESLKVVSILYTKIGDITERYGDILHGDELCDLLYYFKYMFVGDFLRKEAEAAFPR
Length934
PositionTail
OrganismAngiostrongylus costaricensis (Nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Metastrongyloidea> Angiostrongylidae> Angiostrongylus.
Aromaticity0.10
Grand average of hydropathy0.101
Instability index52.91
Isoelectric point5.96
Molecular weight106757.00
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07079
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.11|      28|     176|     662|     691|       1
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  662-  691 (44.14/28.22)	SSLTQ...SFINDNHQRVYSFEDLVYELadRII
  832-  862 (43.96/22.75)	SSLSKlisTFAGEACSRANTENDLWYAL..RLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.67|      22|      28|     232|     253|       2
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  232-  253 (37.89/24.03)	LLRQVTHGRTQWDEILSVLISE
  261-  282 (40.78/26.39)	LPDDVEIPRYQWENLMSIIIDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.78|      23|     238|     563|     586|       4
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  563-  586 (39.74/32.11)	EMTFAE.............MAIRpPMMAEMITPRAHY
  792-  827 (34.03/21.23)	DMTFEEivfdefeerqllqMASR.PLIVNVVAQAYWY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.34|      15|      15|     714|     728|       6
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  714-  728 (26.21/14.68)	PPAAQALYLACIELL
  731-  745 (28.13/16.30)	PHSPEHIVPAMINLL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.97|      53|     222|      92|     156|       7
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   93-  146 (90.77/51.91)	AQLSPEQRRQL.LPAE.RILLKILDPDLNVIPPIFTLTELSRgILKRAYMFPRLAH
  158-  176 (18.30/25.14)	....................................VAELSY.VIGRCFLFPLPAH
  455-  494 (51.91/20.45)	AALSPGPADGLnLKDQcHILLDILCYRLPSIPMNFR.TSMS...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.40|      16|      77|     415|     432|      10
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  415-  432 (27.54/24.59)	HKVDrlPSPACVETCARI
  495-  510 (32.85/21.93)	HSHD..PSPAGLRLCMTI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07079 with Med23 domain of Kingdom Metazoa
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