<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07074

Description Uncharacterized protein
SequenceMLTCEDEVLAIGRKLDKIVDGSKSGESAADLLDVLSKLPITIDVLTKTRIGMTINDLRKKTSDEKLAKKAKNLIKEWKNLVDKREEKKEKTPKCEPTSNSSAKNNKPSSNQQLSKPASSVSNQAYSSSFPPKHLENDEVRLKSVQMILTALRHADLPDGTLDPEEIAIKVEERIFSVHKGTGDKYKAALRSRVFNLRDKKNPALRENVLTGVVKPEKFAVMTSEEMASDEVREMREKFNKAAILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC
Length299
PositionUnknown
OrganismAngiostrongylus costaricensis (Nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Metastrongyloidea> Angiostrongylidae> Angiostrongylus.
Aromaticity0.05
Grand average of hydropathy-0.687
Instability index37.91
Isoelectric point9.10
Molecular weight33632.29
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07074
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.62|      13|      25|     255|     267|       1
---------------------------------------------------------------------------
  255-  267 (27.15/19.73)	PSDMFK.CGKCGKK
  282-  295 (22.47/15.10)	PMTTFVfCLECGNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      80.84|      17|      18|     159|     175|       2
---------------------------------------------------------------------------
  134-  148 (14.22/ 7.15)	..LENDEVRLKSVQMIL
  159-  175 (28.14/21.08)	GTLDPEEIAIKVEERIF
  180-  194 (23.22/16.16)	GTGDKYKAALR..SRVF
  211-  224 (15.26/ 8.19)	GVVKPEKFAVMTSE...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07074 with Med26 domain of Kingdom Metazoa
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