<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07068

Description Uncharacterized protein
SequenceMEIQASAVTAAAANLHALRQHVFKMSDYWQQPQRGPPQHSPGIQHSPISNSTQHQQQVQQMHSPLGQQQQQQQQQQQQQQQQTAVSQVQQNTNATLGQTASPQQQMQQQQQQHALSMNQANQGPQHQSSPAPTTPSPQADHQGAIASSMAQSLHSLAQAQQTMSQASSPSLAVQAVQAAQALNQNLGQALTQALTQNMQQNLGQTLQHNLAQSLTPSLSPQQQQQLLNQPQNLSQASQSLQQNIQSQAQNLSQTLQQQAQNLTQNLGQALNQQALQQQAQNLTQNLQQAQNLTQNLQQQALNMAGTIAQNGGLAGMNMSGTQQQNSQNSMLSPGATSQDSHDATLTEKLVNELQSRASAAGLGGAVGAGGGGGMGNISERTLEECWSTLQRIFMHKSAMQMHARELGAGALTARPGGGVAGGLAGLGVGVGVGVGPGGMITSNEVKPHQCQQCLKSFSSNHQLVQHIRVHTGEKPYKCSYCDRRFKQLSHVQQHTRLHTGERPYKCHLPDCGRAFIQLSNLQQHLRNHDAQVERAKNRPFHCNICGKGFATESSLRTHTSKVSHCSKYPWQRLKELQQRVVFQQHAALIGGPNATSCPVCHKLFLGGEALMEHMKHTHKDPNASGVAIPSADCTTSIAGVYLAKRRTANHPCPVCGKHYVNEGSLRKHLACHPETSQLSTSLRMWPCSVCQAVFTHESGLLSHMEHMRMDPKHQFAAQYVLSRAAAERREREILASSSLGAGLGVLGGSQSGGPQNLQQPPMCPSPSAHSDSSSGNGRLSSAGSEPDFCAGTGLLNNNNNNNNNNMASPGPSGNKLSEILRTGSQPGSAQQYHDEMQSQQQRMAVMAAVSAGLQNSVSPNLSPVDMASLAAAMRMGNNGDMSGGTQGSTGPQQQGVQTSGPEQALRMHQAEALLRSQAEAALRLAVSQAAAAAASSAVGGDVRHHLGQHNGGSTSGMPGHHTNQQMSQQDTLTPDLGEALRLQEQRLEQALRLHGGDPRALSFTLAQHVVNQQSNQQP
Length1018
PositionTail
OrganismAtta cephalotes (Leafcutter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Atta.
Aromaticity0.03
Grand average of hydropathy-0.666
Instability index62.28
Isoelectric point8.89
Molecular weight108995.91
Publications
PubMed=21347285

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07068
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     279.02|      29|      29|     466|     494|       1
---------------------------------------------------------------------------
  446-  463 (21.39/ 7.49)	.................KPHQCQ.Q..C...L...KS....FSSNHQL
  466-  494 (56.06/32.00)	H.IRVH.......TG.EKPYKCS.Y..CDRRF...KQ....LSHVQQH
  496-  524 (44.21/23.62)	R.L..H.......TG.ERPYKCH.LpdCGRAF...IQ....LSNLQQH
  528-  553 (24.31/ 9.55)	HdAQVE.......RAkNRPFHCN.I..CGKGF...AT....ES.....
  555-  579 (28.40/12.45)	..LRTH.......TS..KVSHCSkY..PWQRL...KE....L...QQR
  585-  616 (36.53/18.19)	H.AALI.......GG.PNATSCP.V..CHKLFlggEA....LMEHMKH
  642-  668 (42.08/22.12)	L.AKRR.......TA.NHP..CP.V..CGKHY...VN....EGSLRKH
  671-  706 (26.04/10.77)	....CHpetsqlsTS.LRMWPCS.V..CQAVF...THesglLSHM.EH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     224.43|      29|      29|     238|     266|       2
---------------------------------------------------------------------------
   71-  102 (33.82/ 7.99)	QQQQQQQQQQQQTAVS..QV.QQNTNATL.....gqtASP
  103-  124 (38.92/10.41)	QQQMQQQQQ.........QH.ALSMNQAN........QGP
  160-  194 (32.25/ 7.24)	QQTM.SQASSPSLAVQavQA.AQALNQNL...gqaltQAL
  195-  222 (31.30/ 6.79)	TQNMQ...QNLGQTLQ..HNlAQSLTPSL......spQQ.
  241-  270 (49.51/15.44)	QQNIQSQAQNLSQTLQ..QQ.AQNLTQNL.......gQAL
  272-  307 (38.64/10.28)	QQALQQQAQNLTQNL...QQ.AQNLTQNLqqqalnmaGTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     214.71|      54|      58|     892|     949|       3
---------------------------------------------------------------------------
  823-  864 (64.73/29.23)	...GSQ...PGSAQQYHDE....MQSQ.QQ...RMAV....MAAVSAGLQNSVS...PNLSPV
  892-  949 (86.56/49.05)	QQQGVQTSGPEQALRMHQAEAL.LRSQ.AEAALRLAVsqaaAAAASSAVGGDVR...HHLGQH
  959- 1008 (63.42/28.46)	GHHTNQQMSQQDTLTPDLGEALrLQEQrLEQALRLH.............GGDPRalsFTLAQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.19|      19|      44|     359|     377|       4
---------------------------------------------------------------------------
  359-  377 (39.14/19.20)	AAGLGGAVGAG.GG...GGMGNI
  423-  439 (21.96/ 7.38)	LAGLGVGVGVGvGP...GGM...
  739-  757 (20.09/ 6.10)	...LGAGLGVL.GGsqsGGPQNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.45|      13|      80|     795|     811|       5
---------------------------------------------------------------------------
  322-  334 (24.82/ 8.37)	QQQNSQNSMLSPG
  798-  810 (25.63/11.86)	NNNNNNNNMASPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.32|      16|      35|      16|      33|       6
---------------------------------------------------------------------------
   16-   33 (29.43/18.36)	HalRQHVFKM.SDYWQQPQ
   54-   70 (26.88/11.12)	H..QQQVQQMhSPLGQQQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07068 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AASSAVGGDVRHHLGQHNGGSTSGMPGHHTNQQMSQQDTLTPDLGEALRLQEQRLEQALRLHGGDP
2) GVLGGSQSGGPQNLQQPPMCPSPSAHSDSSSGNGRLSSAGSEPDFCAGTGLLNNNNNNNNNNMASPGPSGNKLSEILRTGSQPGSAQQYHDEMQSQQQRMAVMAAVSAGLQNSVSPNLSPVDMASLAAAMRMGNNGDMSGGTQGSTGPQQQGVQTSGPEQALRMHQAEAL
3) IAQNGGLAGMNMSGTQQQNSQNSMLSPGATSQDSHDATLTEKLVNE
4) LGQALTQALTQNMQQNLGQTLQHNLAQSLTPSLSPQQQQQLLNQPQNLSQASQSLQQNIQSQAQNLSQTLQQQ
5) MEIQASAVTAAAANLHALRQHVFKMSDYWQQPQRGPPQHSPGIQHSPISNSTQHQQQVQQMHSPLGQQQQQQQQQQQQQQQQTAVSQVQQNTNATLGQTASPQQQMQQQQQQHALSMNQANQGPQHQSSPAPTTPSPQADHQGAIASSMAQSLHSLAQAQQTMSQASSPSLAVQAVQA
933
744
307
186
1
998
913
352
258
178










Molecular Recognition Features






MoRF SequenceStartStop




NANANA