<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07061

Description Uncharacterized protein
SequenceMVTGPTEHGIQADVIFVIEGTAVNGAYLNDLKTNYVIPTLEYFSQGGIEDREYVAENSTTLYGIVVYHAADCLPSPCTETLGPYSNPHKLLMVLDKLEMVGGKGESFANIGEGLATGLLCFEDLQLRREPNTASQKHCILICNSPPYQTMIQETYKFAGHTIEQLATIYQERNINISILSPRKIPALYKLFEKAGGDLQSSQTKNYAKDPRHLVLLRNYNLKERPVSPQMGGNVHNTAATAAQIPLSPLQSNDSPNTNQVQQNIAPPNQQQGPPFRNQAPPQNITSVHQTVTPSMAAPMNTARPPYNPQIAAPPNYHPPGVNIATRPRWMRPFIAPGATAPANTQGSALIAQLTQPPSSLGLNVAAFNQRLDVAGNNVMAANQQQQQQQLTQQQQQLRLTMQLQQQNVQQATMSMAAQPTHNQPGAQLTASCISQSVPTQVSQTVTASQQAPVSVSSITQQITHSQAQGNVSTGTVQNQQLVPRERQNIWQGIVEWIEKAKNPTDAQKQTRHVPCQVSANAKDGDPELKADTWPPKLIMQLMPKQLIGSIGGTYLKNSKSVVFHPTPCEALESLTKMMTAGFAGCVHFTSASSSPACEIKVLILLYTIDKKTYLGFIPNDQTAFVDRLRKVIQQQKTSQNASVRQANPGPGNTIPAPMSTTGTQGGILMSQTNTMAMGGGQITQNVVSTAPPQTLTSTSGPQMTQMNMQNSGINGPQANTGAGGMIGQQRPPYDDIEIARHQNLLKIQHLRQTLEAAQQQEAQYKSQLEVNIQQNLEVAQQQEMQYKQQLEAQQAQRGLNPAAMANQQANSQRLMRPVSTNNLGLRHLLQQPQPQYSVRQVFGVQQQMVGPRGQIATRPMAPGNAQNQQFEDVSNYDFLG
Length880
PositionUnknown
OrganismAtta cephalotes (Leafcutter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Atta.
Aromaticity0.05
Grand average of hydropathy-0.507
Instability index52.16
Isoelectric point8.80
Molecular weight96113.51
Publications
PubMed=21347285

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07061
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     182.87|      34|      35|     279|     312|       1
---------------------------------------------------------------------------
  280-  312 (53.77/19.02)	.PPQ....NITS....VHQTVTPSMAAPMNTARPPYNP.QIAA
  317-  348 (33.52/ 8.88)	HPPG...vNIATrprwMRPFIAPGATAPANT........QGSA
  355-  391 (29.57/ 6.90)	QPPSslglNVAA....FNQRLDVAGNNVMAANQQQQQQ.QLT.
  404-  430 (36.78/10.51)	.QQQ....NV........QQATMSMAAQPTHNQP..GA.QLTA
  709-  740 (29.22/ 6.73)	QNSG...iNG........PQANTGAGGMIGQQRPPYDDiEIAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.73|      27|      29|     181|     207|       2
---------------------------------------------------------------------------
  146-  173 (20.79/ 7.25)	PYQtmIQET..YKF...AGHTIEQlatiYQERN..
  181-  207 (46.71/25.19)	PRK..IPAL..YKLFEKAGGDLQS....SQTKNYA
  210-  238 (38.46/19.48)	PRH..LVLLrnYNLKERPVSPQMG....GNVHNTA
  241-  256 (21.77/ 7.93)	AAQ..IP.L..........SPLQS....NDSPN..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.74|      18|      29|     524|     552|       3
---------------------------------------------------------------------------
   87-  104 (32.38/12.70)	PHKLLMVLDKLEMVGGKG
  534-  551 (33.35/15.76)	PPKLIMQLMPKQLIGSIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.46|      19|      19|     751|     769|       4
---------------------------------------------------------------------------
  751-  767 (26.11/11.29)	......RQTLEAAQQQEAQYKSQ
  768-  789 (30.14/14.36)	LE.vniQQNLEVAQQQEMQYKQQ
  790-  812 (24.21/ 9.84)	LEaqqaQRGLNPAAMANQQANSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      58.58|      22|      56|     553|     578|       7
---------------------------------------------------------------------------
  553-  569 (19.44/15.90)	...................TYLKNSKSvvFHPTP.CE
  570-  598 (13.57/ 8.60)	ALESLTKmmtagfagcvhfT..SASSS......PaCE
  604-  622 (25.58/15.10)	LLYTIDK...........kTYLG......FIPND.QT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.43|      16|      17|     460|     476|       8
---------------------------------------------------------------------------
  460-  476 (22.57/17.00)	QQITHSQAQgNVSTGTV
  479-  494 (27.86/16.20)	QQLVPRERQ.NIWQGIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.23|      17|      18|     823|     839|      10
---------------------------------------------------------------------------
  823-  839 (30.12/14.21)	LGLRHLLQQPQPQYSVR
  842-  858 (30.11/14.20)	FGVQQQMVGPRGQIATR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07061 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGQITQNVVSTAPPQTLTSTSGPQMTQMNMQNSGINGPQANTGAGGMIGQQRPPYDDIEIARHQ
2) QQEMQYKQQLEAQQAQRGLNPAAMANQQANSQRLMRPVSTNNLGLRHLLQ
3) QQKTSQNASVRQANPGPGNTIPAPMSTTGTQGGILMSQTNT
4) RPVSPQMGGNVHNTAATAAQIPLSPLQSNDSPNTNQVQQNIAPPNQQQGPPFRNQAPPQNITSVHQTVTPSMAAPMNTARPPYNPQIAAPPNYHPPGVNIATRPRWMRPFIAPGATAPANTQGSALIAQLTQ
5) VAGNNVMAANQQQQQQQLTQQQQQLRLTMQLQQ
6) VSVSSITQQITHSQAQGNVSTGTVQNQQLV
679
781
634
224
373
453
742
830
674
355
405
482










Molecular Recognition Features






MoRF SequenceStartStop




NANANA