<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07054

Description Uncharacterized protein
SequenceMETKVTSKTSSLKALLLRAWRERWTDLQWGINIKTILPRGVSGDVYNLADCILQQALVGPGPNQLVLSYLKHSLSSQLVSYAAVLQRISKYDAFHKPHCIVSLLEFLESIQVGITCRGKPEEDLLAAAVLSIVHWLLQCYLHTLTKTPQSNPLTPHPSELIDKPASILQQMLNSDFLCAMMYLAKYDDKDLYIEVVKKCQEIETLLKTSTQKSVVPIEDSLKKLCNLEIESLCPEKTKMESITHCLQPLFAVQVLLNPSTETTVFVNQLLMVQRLKSYTNARLYCEIIRACLMCLHNVTGTFKESQWGAFTFLKVPHILKELHVSNLNGDEKFEYSQDILDAFELLLQFTPLLDIMDTTCSCNYVECLLNELQKVNLVTEKQAKQIGARREGATTTSSIPKVIVRAGQTLNGILRTLNADYAKIQEGLLSVLYQVLTGKSFELMLAVATVEGELKTFVTKLIKFNECSKQINEPVPDKTAATRAMLFDVSFLMLCSIVQTYGSDVVLEEGGDSFFEQWVRECMPERNKLKSPQRMLQSVDSARVDALLAQINSPDPDFKSSNLKWHVACQSAMGAVKELLCAWESGVLGAGDVKRALDGLRATACCLPVCAAAWLCAYMSITHQDALLKPMNMVQHFLTPLSGDEMQDNLKDRSSLMVQIIRKMQYDVHPPTQSKTKVLSMSHSIISRQPILEQLESVWQNINQRGWINIQATQSLESLLNTGGSLWFVTNIVKEVLKYRYQEELDQAVDLAFAVFHLDIENCTLDLINHIIPQYLHNSMQSDELVEPQSSILAKLCVYCIFSTLEYNNSNPYRGNSRKRVRRDLDTDDLDALGVSNKLLRLNETGENVPMFSSQSPQAQGSSNGQKSVILRDPLMTALNNLFTIFAFLAGRDGEVSQQTHFILQFLRLMVQCGKDRTRIVLQGMSQTLVPCLLKALPELFTTDILLRLYDIQTIIGRKATARDLCMLRNINLKPTK
Length977
PositionTail
OrganismAtta cephalotes (Leafcutter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Atta.
Aromaticity0.07
Grand average of hydropathy-0.042
Instability index47.00
Isoelectric point6.57
Molecular weight110030.54
Publications
PubMed=21347285

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07054
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.16|      36|     114|      52|      96|       1
---------------------------------------------------------------------------
   54-   92 (55.38/45.97)	QQALVGPGPNQLV...LSYLKHSLSSQLVSyaaVLQRISKYD
  149-  187 (59.79/26.87)	QSNPLTPHPSELIdkpASILQQMLNSDFLC...AMMYLAKYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.93|      43|     275|     396|     463|       2
---------------------------------------------------------------------------
  413-  463 (51.49/93.30)	ILRTLNADYAKI.QEGLLSVlyQvlTGKSFELMLAVAtveGELkTFVTKLIK
  691-  734 (72.44/46.15)	ILEQLESVWQNInQRGWINI..Q..ATQSLESLLNTG...GSL.WFVTNIVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.99|      15|     277|     233|     247|       3
---------------------------------------------------------------------------
  233-  247 (30.03/17.14)	C.PEKTKMESITHCLQ
  522-  537 (24.96/13.14)	CmPERNKLKSPQRMLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.03|      30|     562|     339|     372|       6
---------------------------------------------------------------------------
  339-  372 (46.65/38.40)	ILDAFELLLQFTP.....LLDIMDTTcscnYVECLLNEL
  903-  937 (47.38/27.49)	ILQFLRLMVQCGKdrtriVLQGMSQT....LVPCLLKAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.02|      26|     700|      99|     124|       8
---------------------------------------------------------------------------
   99-  124 (45.56/32.70)	CIVSLLEFLESIQVGITCRGKPEEDL
  800-  825 (47.47/34.39)	CIFSTLEYNNSNPYRGNSRKRVRRDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07054 with Med24 domain of Kingdom Metazoa
Unable to open file!