<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07046

Description Uncharacterized protein
SequenceMMGILYEKRPLKRPRLGPPDVYPQELKQKEDELSLTNVKHGFMATTTQLTDESGTGRNYNVTAAKVGAYFNAILAKKEELATMPDTGRKRQQINPKDNFWPVTARTKNGIEAWFKDLSGSKPLVTLAKKAPNFNKKEEIFMMLCEYQVPMLRAAWFIKLSSAYTVAVSEAKIKKRQLPDPTTEWTGTLIKFLKDQLSKLQEYYHMGNHVAASNNNNMTNNSCNNNGITGTNSSNSNSSSNSSNNNSNNNSVNNNNNNNSSNNTSNGTGNNQPSTPTSSSQSVTGSTMNEEHKLALKQWHYCVQLAKYMFEEGLLDRQELLQWILELLDKIRSSPSEDGILKLLLPLALQYLEEFIQSELLARRLAYLCCRKLAHMCNNVESNNNPQSPSITKNEVNGSKDTTVAVQGSLNLLTIAFNDYLTCAHHRDVIYSLSTIIQVITLECPTALVWNSVGEGKAPSVLNGSPLDYLPCPPAALPCPPASSGNPTMKQLRIAQENIRARSQAAEGRWSCDKWQQSSAGTTTTKVLAALDALDRHSFDKMDASNSLDTLYAKIFTPPPKDNSNERDTKTEYNPQQDSAVVEILCEWAVSAERWGEHRAMAVAKLLEKRQSEATGETNDNDDKDSTCSNGSPPVLPIFQPLLMKFLDMDAPVLDNTSNQSKAQFTNLVHLFSELIRHDVFSHDAYMCTLISRGDLIQGPVASKPGTPSNREPIDEDSLFPGIDLKPTKLEVSDHGRTMDYDDSKIDDDLDKILQHIKEDQQNSMDAPDSPKEDALTGHGGHESLDSKMPSSHSRHLLYTTHFPLPQDETCSQHDCNQRHVLLYGVGRIRDEARHVVKKMTKEVCKLFGKKFSIDVAEGGKVKKHSRSEFNFEAVTMKFQNLSYFDQHVVTWQCATQVIEMLNTFALAGSSYLPVHEHVAFLFDLMELALNIYGLIDVCIQILKELPEVEAQLTARNSQLVRSYTTNLSLYIVGVLRRYHCCLLLSPEQTTAVFDLLCKVVKHVSNPSDCSSAERCVLAHLYDLYSTCSLLKTKSHGVEAFSNAYPKIRAALYSTLQPTPSSHVYNSQFMVDVFTSPRRGGKIEPQWARQLNETPANRYSFVCNAIVAVCSETDNDKLNDIAITCAELTACCNALNAEWLGVLMALCCSSNSSAFYIDVLNQVDVQDLSIHNSLAIFTSILIARHCFSLEDFVVHIALPSLVKTCNDGRGDIDIEVEAGARLTCHLLLRLFKTVECPQPALYSVSTSPHPLPSGNSRGYSIKLSCDRHLLAAAHNNIRVGPVLAVLKAILVVGDATAAKQPPKKVDIPLSHSTKGGGPASVGVGVGVSSSGPGELSISHILGTSDILGGGDDLGLDLAMSSSSSSAGMTTENVKGFSDFAHHVLRQICSQEWVLERCLQNPEELCHQDMLLDNMLTPRQAQKLLHMICYPETPTEAFIDQKTHITNILENLEQWSLRMSWLDLQLMYKQFTPSSNELSQWLDTVAKAAIDVFQLNNTLSNKSDKKSGSIWLVAPLVSKLPSAVQGRVLKVAGQVLESGNWSKTAGRERGRSKSPSLFNHQPFLSLVLTCLKGQDDQREGLLTSLHSQLSQFLNTSKEEKHIGSEDPKTREVLQDALQLRFSLVGGVFDTIQRNTTATTDWAILLVQLVSYGVIDLNNNAELFTTVIDMLATLIHSTLVSDSQSEKDENKKHYQNLMKKLKKELGDRNSSSIRFVRQLLPLPKLTMEVITCEPVGCLTDTKGNKIAGFDSIDKKQGLQVCDSQRVSAWELLEGHKNPAPLSWAWFRAVRLERKPLTYQNAHKLLRYHTHSQIRPASHYLDPPPLPPEDLEPDKKELEPGKADTPMSIDSPGRVGGSVGSTGVGNVNTNGKGKAMRNKRHNRRAKGAATPTTPISQQMQQPPQLQQIAFGNQQAPVAQQPGMFTGQPPQPQQQWYSNQQTHTPAQQYGYSQQLPPTPVGGPRYERPGMNNQSKQALSNMLRLRLPSNQFMGSQQQPPTATPVAGPGAFQGMQRQFIRQQLRAQHGAPGINPQQGMFAAQQQQQQQQQQQQQGIYAGIQQGMNQNYAGYGGQQMMQQQQQQQQQTSQQTQQQQQQQLLQQQQQQQQQQQQGILNQQQSMMFPNQQQMMGPQRGQEYIPQQRMQPSAARPPYLQAPNVTMNAMGPMGAGVQNQPAPPYRQSAGKPGAVGVTGVGTANVSLQQNQQFQQQQAINQRMRQQMLAMQQQQQQAQQQQAAQQQQQQQQGAAGGQQPTPQLVTHLQRHLSQPPQHSYQHQPPPY
Length2274
PositionKinase
OrganismAtta cephalotes (Leafcutter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Atta.
Aromaticity0.06
Grand average of hydropathy-0.529
Instability index50.22
Isoelectric point7.53
Molecular weight252565.59
Publications
PubMed=21347285

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07046
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     256.36|      22|      22|    2068|    2089|       1
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 1893- 1915 (28.30/ 8.34)	Q.QM.QQPPQLQ....QIA..fgNQQAPV...AQ
 1922- 1945 (29.69/ 9.13)	G.Q..PPQPQQQwysnQQT....HTPAQQ...YG
 2009- 2031 (26.34/ 7.24)	QrQFIRQQLRAQ....HGA....PGINPQ...QG
 2036- 2061 (33.99/11.54)	Q.QQQQQQQQQQ....QQGiyagIQQGMN...QN
 2068- 2089 (45.76/18.14)	Q.QMMQQQQQQQ....QQT....SQQTQQ...QQ
 2091- 2111 (31.03/ 9.88)	Q.QLLQQQQQQQ....QQQ........QQgilNQ
 2112- 2133 (34.61/11.89)	Q.QSMMFPNQQQ....MMG....PQRGQE...YI
 2249- 2270 (26.63/ 7.41)	P.QLVTHLQRHL....SQP....PQHSYQ...HQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.97|      24|      27|    2196|    2222|       2
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 2199- 2222 (45.71/25.11)	QQFQQQQAINQRMRQQMLAMQQQQ
 2223- 2246 (44.26/17.27)	QQAQQQQAAQQQQQQQQGAAGGQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      59.89|      14|      15|     234|     247|       3
---------------------------------------------------------------------------
  214-  225 (19.42/ 7.27)	......NNNMTNNSCNNN
  228-  245 (19.25/ 7.14)	TGtnssNSNSSSNSSNNN
  246-  263 (21.22/ 8.65)	SNnnsvNNNNNNNSSNNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.23|      18|      23|     778|     798|       4
---------------------------------------------------------------------------
  778-  798 (29.50/23.30)	HGgheSL.DSKMPSSH...SRH.LLY
  801-  823 (22.73/ 9.44)	HF...PLpQDETCSQHdcnQRHvLLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     162.37|      26|      27|    2139|    2164|       5
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 1811- 1833 (36.05/17.16)	RPA...SHY.LDPPPLPPEDLEPDKKE
 1835- 1861 (38.32/18.76)	EPGKADTPMsIDSPGRVGGSVGSTGVG
 2139- 2164 (48.00/25.59)	QPSAARPPY.LQAPNVTMNAMGPMGAG
 2168- 2189 (40.01/19.96)	QPA...PPY.RQSAG.KPGAVGVTGVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.09|      30|      31|    1315|    1344|       6
---------------------------------------------------------------------------
 1279- 1312 (32.95/16.42)	.GPvlavlkAILVVGDATAAKQP..PK.KVDIPLSHST
 1315- 1344 (50.94/29.61)	GGP......ASVGVGVGVSSSGP..GELSISHILGTSD
 1347- 1377 (42.20/23.20)	GGG......DDLGLDLAMSSSSSsaG.MTTENVKGFSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.65|      17|      23|     733|     749|       7
---------------------------------------------------------------------------
  733-  749 (33.16/18.66)	DHGRTMDYDDSKIDDDL
  759-  775 (30.49/16.57)	DQQNSMDAPDSPKEDAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.69|      23|      27|     505|     527|       9
---------------------------------------------------------------------------
  478-  491 (19.47/ 6.35)	......C...PPA.SSGNPTMKQL
  505-  527 (43.72/23.27)	AEGRWSCDKWQQS.SAGTTTTKVL
  532-  555 (33.50/16.14)	ALDRHSFDKMDASnSLDTLYAKIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.09|      21|      23|    1102|    1124|      11
---------------------------------------------------------------------------
 1102- 1122 (37.32/28.12)	CNA........IVAVCSETDN.....DKLNDIAI
 1131- 1164 (25.77/ 9.98)	CNAlnaewlgvLMALCCSSNSsafyiDVLNQVDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.22|      25|      32|    1037|    1064|      12
---------------------------------------------------------------------------
 1037- 1063 (39.71/34.20)	VEAFSNayP....KIRAALYSTLQPTPS...SHV
 1070- 1101 (35.51/17.38)	VDVFTS..PrrggKIEPQWARQLNETPAnrySFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.12|      18|      39|    1947|    1964|      14
---------------------------------------------------------------------------
 1947- 1964 (37.37/21.90)	SQQLPP.TPVGGPRYERPG
 1970- 1988 (23.75/10.59)	KQALSNmLRLRLPSNQFMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.94|      35|      39|      58|      96|      15
---------------------------------------------------------------------------
   58-   96 (51.48/52.14)	NY.NVTA.AKVG..AYFNAiLAKKEELATMpdtGRKRQQINPK
   98-  136 (49.47/34.80)	NFwPVTArTKNGieAWFKD.LSGSKPLVTL...AKKAPNFNKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.02|      24|      27|    1622|    1648|      17
---------------------------------------------------------------------------
 1624- 1648 (37.54/36.38)	GVFDtIQRNT...TATTDWAILLVQ..LVS
 1650- 1678 (30.48/15.86)	GVID.LNNNAelfTTVIDMLATLIHstLVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.29|      17|      32|    1571|    1590|      18
---------------------------------------------------------------------------
 1571- 1590 (21.88/24.99)	GQDD..QREGLLTSLhsQLsQF
 1601- 1619 (25.41/14.58)	GSEDpkTREVLQDAL..QL.RF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.93|      18|      32|     624|     642|      19
---------------------------------------------------------------------------
  624-  642 (28.98/22.58)	DSTcSNGSPP....VLPIFQPLL
  654-  675 (24.96/12.73)	DNT.SNQSKAqftnLVHLFSELI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.87|      16|      18|     336|     351|      20
---------------------------------------------------------------------------
  323-  338 (24.26/13.59)	ILELLDKIRSSPSEDG
  339-  354 (25.61/14.77)	ILKLLLPLALQYLEEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.94|      14|      22|     690|     704|      21
---------------------------------------------------------------------------
  690-  704 (19.63/15.89)	ISRGDLIQGpVASKP
  713-  726 (25.31/14.66)	IDEDSLFPG.IDLKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.98|      22|      27|     882|     906|      22
---------------------------------------------------------------------------
  882-  906 (34.66/39.17)	SYF..DQHVVtwqCATQVIEM.LNTFAL
  910-  934 (30.32/21.84)	SYLpvHEHVA...FLFDLMELaLNIYGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.03|      10|      23|    1516|    1525|      23
---------------------------------------------------------------------------
 1516- 1525 (18.02/12.59)	SKLPSAVQGR
 1540- 1549 (17.01/11.30)	SKTAGRERGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.92|      19|      31|    1396|    1414|      26
---------------------------------------------------------------------------
 1396- 1414 (35.81/24.40)	CL.QNP.EELCHQDMLLDNML
 1427- 1447 (24.11/13.60)	CYpETPtEAFIDQKTHITNIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.78|      16|      18|    1241|    1256|      27
---------------------------------------------------------------------------
 1241- 1256 (31.06/19.02)	YSV..STSPHPLPSG..NSR
 1258- 1277 (19.72/ 9.09)	YSIklSCDRHLLAAAhnNIR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07046 with Med12 domain of Kingdom Metazoa
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