<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07043

Description Uncharacterized protein
SequenceMAAACYEKEVVVGAAIHHGHGHHHHHHHHHHHHHHHHSNGVVASSAVGVGVNVGVGGVTGQTVLPATSTGLDDAAVVAAAAAAAAASSNPAAATAAAAAAAAAAATATATAAATAVAINSYKVQEYKDYSQPLHVDCSVEYELPSQAKPPPGGGEPLLMIHPCYYRRAERERRSPFVNNLPPPAAPATTPMSASRRNGRRSAATAAAVTVATAAVAVAATSSTTTTVVPPSNNIVVSSNVVSASVVSPATSIASSSVAAAVVAAADSGSGLISTSGQMSAVTMAAASYRAALNVAATLSQQQQQQQPSQRRHHPQQQQPQQQQQQQQQPSTHPHHHHHHHRNHTHAPHQHQQQQQQQQQQQQQQQHHPQQQPQQRPVTPTASGPADLISADEKAVISGIYQHYFRAMRAHNHQHRQQQQQQQQQQQQQQQQHRTTTTHQLHHQPHQSDRSSSSSSSVTSPTSASISGILRQTYQQAYSNIAATSSSSGSHHRAGTSAVSAIAHHPYRRPSVTLLSRTASHIGQQASSSSSSSIFGASNGVSAAAGVSSVYASTIHRHHATSLHALQAAAGFYETPSYHALLPQS
Length584
PositionTail
OrganismAtta cephalotes (Leafcutter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Atta.
Aromaticity0.03
Grand average of hydropathy-0.555
Instability index65.90
Isoelectric point9.81
Molecular weight61404.29
Publications
PubMed=21347285

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07043
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.18|      21|      31|     312|     332|       1
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  308-  329 (41.00/10.73)	SQRrHHPQQQQPQQQQQQQQQP
  363-  379 (30.14/ 6.14)	QQQ.HHPQQQ.P...QQRPVTP
  434-  454 (31.04/ 6.51)	TTT.THQLHHQPHQSDRSSSSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.06|      26|      63|     336|     362|       2
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  336-  361 (61.09/16.12)	HHHHHR.....NHTHAPHQHQQQQQQQQQQQ
  400-  430 (47.97/ 6.29)	YQHYFRamrahNHQHRQQQQQQQQQQQQQQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.11|      18|      18|      78|      95|       3
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   78-   95 (32.96/13.24)	AAAAAAAAASSNPAAATA
   98-  115 (29.15/10.81)	AAAAAAAATATATAAATA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.67|      25|      29|     235|     263|       4
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  235-  259 (38.15/19.99)	VVSSNVVSASVVSPATSIASSSVAA
  272-  296 (38.52/12.93)	ISTSGQMSAVTMAAASYRAALNVAA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.92|      23|      29|     474|     501|       5
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  478-  500 (39.61/18.68)	SNIAATSSSSGSHHRAGTS.AVSA
  519-  542 (32.31/ 7.28)	SHIGQQASSSSSSSIFGASnGVSA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.83|      21|      30|     149|     174|       6
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  149-  174 (32.41/32.15)	P.....PPGGGePllMIHPCYYRRaeRE.RRS
  175-  201 (31.42/15.72)	PfvnnlPPPAA.P..ATTPMSASR..RNgRRS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.84|      20|     162|      42|      65|      11
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   42-   65 (28.80/25.91)	VASSAVGvgvnVGVGGVTGQTVLP
  210-  229 (32.04/18.24)	VATAAVA....VAATSSTTTTVVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07043 with Med15 domain of Kingdom Metazoa
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