<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07042

Description Uncharacterized protein
SequenceMVEKMSSETQITNILNDILKVEAIEEAFSCVLVHHPKKETDKVAAWHQELRTAMTGLTKEQQEAAVRQFLSIAAAMTNHRRLQLLLSLLENLVHSNFLPARLVCECILSCDKLQYQLEDFWVECFVLIKHILGGVDYKGVREIMKGCKEKAQTIPARLDASVQPQLKALENVIEFIFDRNACLLPGYFIVNEIQKAYPDGKNWPHWKLAKLLSDFVESFRHTAQMVSIVGHSKMLPVVEHTGYADYLINPWLLDPTTLKFSLKGNLPYDPDLLKPQTELLRYVLEQPYSRDMVCSMLGLQKQHKQRCVVLEEQLVELVILAMERSENETLPAEGMDGTVANHWVWLHLSSQLIYFILFQFACFPSIVMAIHDKLAGRELRKGRDHLMWVLLQFISGSIQRNPLSNFLPVLKLYDLLYPEKEPLPVPDYTQALCTHQMAITCIWIHLLKKAQTEPGTNIHRPIPHTLKVHHEFLQHLVMPNASLCMGSDYRIALLCNAYSTNQEYFSRPMAALVDTILGTQKNQQQQPLQNLQNNAALANGPTTPLSMSILDSLTVHSKMSLIHSIVTHVIKLAQSKSNMALAPALVETYSRLLVYTEIESLGIKGFISQLLPTVFKSHAWGTLYTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQTQLHLCVESTALRLITGLGSAEVQPQLSRFLSEPKTLVSAESEELNRALVLTLARSMHVTGTGADSLSGTWCKELLNTIMQNTPHSWANHTLQCFPPVLSEFFQQNSVAKENKQQIKKAVEEEYRNWASMNNENDIIAHFSVPGTPPLFLCLLWKMILETDRISPIAYKILERIGARALSAHLRKFCDYLVFEFANSVGGQHVNKCVDTINDMIWKYNIVTIDRLVLCLALRTQEGNEAQVCFFIIQLLLLKAAEFRNRVQEFVKENSPEHWKQSNWHEKHLAFHRKFPEKFAPEGIMEQTSGGPSQYQNLPVYFGNVCLRFLPVFDIVVHRYLEIPPVIKSLEILLEHLGCLYKFHDRPVTYLYNTLHYYEKKLRDRPLLKRRLVSAVLGSLREIRAPGWALSEAYQMYMTRFNDDAVSWVPELDYYIRLVQRIVETMSGTAHFPATDWRFNEFPNPAAHALYVTCVELMALPVAPDAVANFLLDVVAKGYTVVPSDEIHLWINCVGLLLAALPECYWSALHKRLLETISSPGLVNWQYNNLTPFQMFNFNITHNSLLENKYSYMLALAHSVWHHAGVGQITTMPQFIKEKLQPVVSSEEQLIYACHLIGPTLARFNAERPHCVVELAVCLYEMLERVDHTQTTLNYMDSICDLLYHIKYMFVGDMTKNEVECIIRRLRPALQMRLRFIAHINIDEIHTS
Length1361
PositionTail
OrganismAtta cephalotes (Leafcutter ant)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Atta.
Aromaticity0.09
Grand average of hydropathy-0.036
Instability index46.75
Isoelectric point6.73
Molecular weight156032.53
Publications
PubMed=21347285

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07042
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.73|      34|     148|     458|     499|       1
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  458-  499 (56.85/49.47)	IHRPIPHTLKVH...........HEFLQHLVMPNaslcmgsdYRIALLCNAYS
  607-  651 (54.88/31.53)	ISQLLPTVFKSHawgtlytllemFSYRMHHIQPH........YRVQLLSHLHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     496.60|     174|     260|     803|    1020|       2
---------------------------------------------------------------------------
  803- 1020 (262.52/297.77)	PGTPplfLCLLWKMIL...ETDRIS..P.IAY..KILERIgARALS..AHLrKFCDYLVFEFANSVGGQHVNKCVDTIN.............DMIWK.YNIVTIDRLVL...ClalrtqegneaqvcffiIQLLLLKAAE.....FRNRVQEFVkeNSPehwKQSNWHEKHLAFHRKFPEKFAPEGIME.QTS............GGPSQyqnlpvyfgnvcLRFLPVFdivVHRYLEipPVIKSLEILLE..HL.G.CLYKFH.DRP
 1059- 1282 (234.08/168.25)	PGWA...LSEAYQMYMtrfNDDAVSwvPeLDYyiRLVQRI.VETMSgtAHF.PATDWRFNEFPNPAAHALYVTCVELMAlpvapdavanfllDVVAKgYTVVPSDEIHLwinC.................VGLLLAALPEcywsaLHKRLLETI..SSP...GLVNWQYNNLTPFQMFNFNITHNSLLEnKYSymlalahsvwhhAGVGQ............ITTMPQF...IKEKLQ..PVVSSEEQLIYacHLiGpTLARFNaERP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     218.96|      68|     260|      24|     136|       3
---------------------------------------------------------------------------
   56-  124 (115.50/118.03)	GLTKEQQEAAVrQFLSIAAAMTNHRRLQLLLSLLENL.VHSNF.LPARLVCECI.LSCDKLQYQLEDFWVEC
  518-  588 (103.46/51.38)	GTQKNQQQQPL.QNLQNNAALANGPTTPLSMSILDSLtVHSKMsLIHSIVTHVIkLAQSKSNMALAPALVET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.35|      33|     273|     391|     423|       4
---------------------------------------------------------------------------
  188-  219 (45.69/28.64)	..F.IVNEIQKAyPDGKNWPHWKLAKLLSDFVESF
  258-  280 (33.20/18.53)	LKFsLKGNLPYD.P...........DLLKPQTELL
  391-  423 (58.47/38.99)	LQF.ISGSIQRN.PLSNFLPVLKLYDLLYPEKEPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07042 with Med23 domain of Kingdom Metazoa
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