<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07033

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMEQLQTALIAIKVLRSSVGQVFDSLGNGLRADHGEENKENKYLLELQELLTTVSVNLRDVEQAVSSLNPPPGPFNLASTAYLSQETTQERQALYSTLVNSYKWTDKVHEYSNVAQTLFSQNSLKRSYINSSRAKRGRVQTSNHNVPQQQVDSMIGTFDRLFNDMTVSVSRPFASNAVLHVTLGHVLKGVIAFKGLMIEWVVVKGYGEAMDLWTESRHKVFRKVTENAHAAMLHFYSPALPELAVRSFMTWFHSLNNLFSDPCKRCGLHLHSALPPTWRDFRTLEPYHQECKP
Length292
PositionTail
OrganismDufourea novaeangliae (Sweat bee)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Apoidea> Halictidae> Rophitinae> Dufourea.
Aromaticity0.09
Grand average of hydropathy-0.339
Instability index44.27
Isoelectric point8.68
Molecular weight33122.26
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07033
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.35|      23|      41|       3|      25|       3
---------------------------------------------------------------------------
    3-   25 (36.04/27.82)	QLQTALIAIKVLRSSVGQVFDSL
   45-   67 (35.30/27.11)	ELQELLTTVSVNLRDVEQAVSSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.52|      21|      26|     242|     263|       4
---------------------------------------------------------------------------
  242-  263 (37.27/29.03)	LAVRSFM..TW..FHSLNNlFSDPCK
  267-  291 (32.26/20.05)	LHLHSALppTWrdFRTLEP.YHQECK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.28|      10|      21|      91|     102|       6
---------------------------------------------------------------------------
   91-  102 (14.04/15.19)	QALYSTlvNSYK
  115-  124 (18.24/11.58)	QTLFSQ..NSLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07033 with Med27 domain of Kingdom Metazoa
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