<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07028

Description Putative mediator complex subunit 24
SequenceMDQLRVIISEAWRDRLTPFEWSKKIYNQFDFNSLNNNNQKSVVGLGASNSSSILCEILLNLMYIGKAPSPLLVSYLRYALSIKMIDYIEFLCMVCQYSSISKPQHFSLILDIIFDLIKYGHSNDQSVSTANIPTKSIITTFYQQDDDDHLQANWTDSVGSNITSTVTMNSNGNGNGTTMMNGNHQTTVDSSDINGYDNKRKRNAKNKSDNTLKKRKQQATPLNKKQIIVENNESNNNQENEEEETNVNNTLENIHISPSRYQKYLFSFTKLTSLLFDSILHTFQLEEKQQQQHSQSQQNLIYENSIKAINILNLIQPNQKITTFIYLSKFEYQSEFTALSQLFIKIQRHLNIYYQQDQQQQQQQQQQQQQQQQQQQLIENNSNNKKSLGQQLYSHITTNENMRPFREFRQILFKKKLLPTDGIVQLAHNPSQPDNQSILSVGLIIENELTGNRISTLDCSFFYKLLTVQSIRSLSNTDILLEMLKYTFQRLSRFEDPSQPEFKKIKLFILFKIPLFYKLFIHSTQQQPPDNNNNNISSSSSSNNSKIGYFENAILYISQYSTLCHFEDNFLFTLIQVMMKKNLLDVPLLKQLFPNYLNELESLEMELSSGMQSELSFDNIVSMNATIHSREDVSKVGELLESLIGNPIQIDQIQYLIYLIRPQLMNIFDYQDQLVDVIFRILDKVSDNIDTNKILISYLLSLFTEAQILDTLDIHGYTLTLILKLVEFSNYFSNNLNNHSFFTLPFLLLNNILLLYDIKNNEFNMDLLKYKLKELQHKKVVNGVDQQNQFDFVKWMYNGLQNEDISFGNNFQDAKVTDSTDYHFLKILLQKDKTQLDELLSGQNQEYSPWKIVERLPNTLFLLQSCLEKNPTSHHKLEDIIQFLVLNIPYSSIVISNFLTKYQQQDLINLQNLILSIQCPNVNLHDGVSNEYFTIEGCMIHDTLKLIFYPYNNPPPIPLDDSTGNGMVLPEQQFSYNTSLFKSMVNKKYSNTYYLDMQPSIVIHTIIDQFLLDLSPSLNMVPLDVFRYLLDKIDINQMVFLICKELLDIIINTPNMSMYSIRAVELGGYLLGSVIGVESLPILLNSFIPSCSDQIHTSFGGLLLAHLCLCSIVHSNCFLYLEKQNQTLIKALNRFFNTLNESLKRMIAYNPLSGMITYLLSTITQLVHLSDAYNQHQMTCHSNNHITNTSKTIFSILPIDQLEDLSLTLSNISNYFLAISIFDKKDLKYCSKLL
Length1234
PositionTail
OrganismTieghemostelium lacteum
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Dictyosteliales> Raperosteliaceae> Tieghemostelium.
Aromaticity0.10
Grand average of hydropathy-0.260
Instability index43.79
Isoelectric point5.71
Molecular weight142772.28
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07028
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     280.09|      68|      68|     254|     321|       1
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  254-  296 (60.27/33.14)	..................................I................................HISPSR......YQKY.LFSFTKLTSLLF..DSILHTF.......QLEEKQQQQHSQS
  297-  373 (91.74/54.97)	QQNLIYENSIKAINILNLIQPNQKI......ttfI................................YLSKFE......YQS....EFTALSQLFIkiQRHLNIYyqqdqqqQQQQQQQQQQQQQ
  374-  437 (80.00/46.83)	QQQLI.EN.....NSNNKKSLGQQLyshittnenM................................R..PFR.....eFRQI.LFK.KKL..LPT..DGIV..........QLAHNPSQPDNQS
  440-  528 (48.08/24.69)	SVGLIIENELTGNRISTL.................dcsffyklltvqsirslsntdillemlkytfqRLSRFEdpsqpeFKKIkLFILFKI.PLFY..KLFIH............STQQQP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.74|      13|      15|    1007|    1021|       2
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  991- 1003 (22.71/ 6.87)	NTYYLDMQPSI.VI
 1008- 1021 (19.02/13.61)	DQFLLDLSPSLnMV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.12|      41|      72|     824|     867|       3
---------------------------------------------------------------------------
  824-  867 (64.09/43.91)	FLKILLQKDKTQLDEL.LSGQNQEyspWKIVERLPNTLFLLQSCL
  898-  939 (69.03/39.11)	FLTKYQQQDLINLQNLiLSIQCPN...VNLHDGVSNEYFTIEGCM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     215.68|      72|     496|     638|     722|       5
---------------------------------------------------------------------------
  646-  722 (104.02/85.64)	NPIQiDQIQYLIYLIrPQLMNIFDYQDQ.............LVDVIFRILdkVSDNIDTNKILISYLLSLFTEAQILDTLDIHgYTLTLI
 1150- 1234 (111.66/59.70)	NPLS.GMITYLLSTI.TQLVHLSDAYNQhqmtchsnnhitnTSKTIFSIL..PIDQLEDLSLTLSNISNYFLAISIFDKKDLK.YCSKLL
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.63|      15|      16|     542|     556|       6
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  542-  556 (26.65/12.93)	SNNSKIGYFENAILY
  558-  572 (28.98/14.61)	SQYSTLCHFEDNFLF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.82|      46|     649|     102|     161|       8
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  102-  161 (68.10/69.81)	KPQHFSLildiifDLIKYghsndqsvSTANIPTKSIITTFYQQDDDDHLQ......ANWTDSVGSN
  759-  810 (73.72/45.31)	KNNEFNM......DLLKY........KLKELQHKKVVNGVDQQNQFDFVKwmynglQNEDISFGNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.93|      14|      16|    1079|    1092|       9
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 1079- 1092 (25.68/14.51)	SLPILLNSFIPSCS
 1098- 1111 (26.25/15.00)	SFGGLLLAHLCLCS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.70|      22|     428|     614|     645|      12
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  624-  645 (36.74/48.36)	NATIHSREDVSKVGELLESLIG
 1055- 1076 (38.96/23.29)	NMSMYSIRAVELGGYLLGSVIG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07028 with Med24 domain of Kingdom Amoebozoa
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