<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07023

Description Putative mediator complex subunit 27
SequenceMQTSPAPHIQQSQQPHQNPQHQQQHPPQQQHQQQQQQQQQQQPQPLFTYTLPSSQQKQLLEYYDDVLKQIGYIRASVSDFYNSIIQDVKQNVNSSTLKVNKEEMLQNLKNAKDQMMLAVDRADQLSKKINPYSYPINSSHFPAIEQTWAYSTGIYDQQNLKLQSQLIFENTWRYETSQKSEHILPSLESKLLAQFPNLFKDNEESSLSKKRKQPSASSPSFQQQQQPQNLQDSPFKLPTVPQPLASNLDHFMNLDRIIQSCRNETALEIQKVQKIQTNHSPKGLLVECPDVFKCLIYFGIPEDNKNCFSIERVTVFGLRESFDSFFVSSKYNIFKKISENAFEAISYFSSNPNGGSILKNMLMWLWSFRGLFLEECKGCMNILQLDSSLYLYLPPSFRTYDSFTPYHPQCFQNSLNSGSGGNTTIDK
Length427
PositionTail
OrganismTieghemostelium lacteum
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Evosea> Eumycetozoa> Dictyostelia> Dictyosteliales> Raperosteliaceae> Tieghemostelium.
Aromaticity0.11
Grand average of hydropathy-0.723
Instability index68.21
Isoelectric point7.13
Molecular weight49381.94
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07023
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.72|      16|      17|      11|      27|       1
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   12-   27 (34.26/10.61)	SQQPHQNPQHQQQHPP
   30-   45 (33.46/ 9.03)	QHQQQQQQQQQQQPQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.59|      15|      17|     287|     302|       2
---------------------------------------------------------------------------
  287-  302 (24.94/24.03)	ECPDVFKCLIyFGIPE
  306-  320 (26.65/18.92)	NCFSIERVTV.FGLRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.56|      10|      15|      61|      70|       3
---------------------------------------------------------------------------
   61-   70 (16.69/ 7.72)	EYYDDVLKQI
   79-   88 (16.87/ 7.86)	DFYNSIIQDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.81|      22|      22|     145|     166|       4
---------------------------------------------------------------------------
  145-  166 (40.22/25.08)	EQTWAYSTGIYDQQNL.KLQSQL
  169-  191 (34.59/20.61)	ENTWRYETSQKSEHILpSLESKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.42|      10|      20|     322|     332|       5
---------------------------------------------------------------------------
  322-  332 (16.22/15.72)	FD..SFFvSSKYN
  342-  353 (16.20/ 9.33)	FEaiSYF.SSNPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07023 with Med27 domain of Kingdom Amoebozoa
Unable to open file!