<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP07012

Description Transcription factor Dp-1
SequenceMTQQNKTMNFLIHDVNGHPQVIKVVQSTPNKALSGIVSTTNAGGLKVFKAPNQESQVLSSNTQVLRTISLQNPSTPGQRLVTIPLQNTKMATSKGGESMMTKTIQLTSAQMSDIKQAIASQQQQQQQQQQQQQQQQQQQQQSNTSQLVKDATGKTFISPILDHTGSRKRQDVESGDFVPDKRRKAEKVGKGLRHFSMKVCEKVKKKGTTSYNEVADELVGEFTNPAHINSLTDQQYDQKNIRRRVYDANVLMAMNIISKEKKEIRWLGLPTNSLQECVALEKDKKKKIERIKAKTQQLHQLILSHISFKNLVERNRLNENLRGPPKPNSAIQLPFLIVNTSKKTVIDCSISNDKTEYLFNFNDKFEIHDDIEVLKQMGLAFGLEKGECTEENLQKAKFMVPKSLEKYVEQLASGDLEKFIPVTIPGPSTSMEDLDIKLEGSRPPSSSHTSLSEDPLSPPSQYYSEEEDDEEESDQDDQADSDLEVN
Length486
PositionTail
OrganismTrachymyrmex zeteki
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Trachymyrmex.
Aromaticity0.05
Grand average of hydropathy-0.787
Instability index56.90
Isoelectric point6.78
Molecular weight54712.06
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell
transcription regulator complex	GO:0005667	IEA:InterPro

GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW

GO - Biological Process
regulation of cell cycle	GO:0051726	IEA:InterPro
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP07012
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.75|      20|      21|     259|     278|       1
---------------------------------------------------------------------------
  237-  255 (25.64/15.77)	.DQKN.IRRRVYDANVLMAMN
  259-  278 (33.34/22.56)	KEKKE.IRWLGLPTNSLQECV
  282-  302 (25.76/15.87)	KDKKKkIERIKAKTQQLHQLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.03|      15|      18|      74|      88|       4
---------------------------------------------------------------------------
   74-   88 (26.30/15.84)	STPGQRLVTIPLQNT
   93-  107 (25.73/15.36)	SKGGESMMTKTIQLT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP07012 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATGKTFISPILDHTGSRKRQDVESGDFVPDKRRKAEKVGKG
2) QMSDIKQAIASQQQQQQQQQQQQQQQQQQQQQSNTSQLVK
3) SMEDLDIKLEGSRPPSSSHTSLSEDPLSPPSQYYSEEEDDEEESDQDDQADSDLEVN
4) TPGQRLVTIPLQNTKMATSKGGESMMTKTIQLT
151
110
430
75
191
149
486
107










Molecular Recognition Features






MoRF SequenceStartStop




1) EDPLSPPSQYYSEEEDDEEESDQDDQADSDLEV
453
485