<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06993

Description U-box domain-containing protein 33
SequenceMAVASLSPMPATPPRVNSVNSLRDIGVPGIMTSRREILNEPSPSMVNDTIYVAVAKDVKDSKLNLIWAIQNSGGKRVCILHVHVPAPMIPLTLMGAKFRASALEEQEVQAYHENQRQDMHKTMDAYLSICQRMGVRAGKLYIEKDCIEKGIVELISQYGIQKLVMGAASDKYHSRRMTALRSKKAIYVCEQAPASCHILFICKGFLIHTRDSNLDRGNVEAVSPLVQKKANSEDGHSPHSRSQSVVLNHWIKLTNPAQELFRRARTVNNGHGRSYASVSSSEGFLTPQSPSVVSVCSDSVEPGLTPNLISGGSENVLDLNLNGLSQTNQNLHHSSPPSVLDGGMDDAVYDQIEQAMAEAANARRDAYQETVRRGKAEKDAIDAIRRAKAAENLYKEELELRKELEEEAKKANEELDNMKRWTDKVNEELQLALDQKSSLENQIASTDLMIKELEQKITSAENMLQSYKDELDDMQMQRDNALGEAEELRRKQGEASTAHELQRFSEFSFAEIKEATSNFHPSLKIGEGGYGSIFKGILHHTEVAIKMLNPDSTQGPLEFQQAVEVLSKLRHPNLITLIGACPESWTLVYEYLPSGSLEDRLNCKDNTPPLSWQTRVRIAAELCSALIFLHSNKPHSIAHGDLKPANILLDANLVSKLSDFGISRILSCQESSSNNTTQFWRTVPKGTFVYVDPEFLACGELTPKSDVYSFGIVLLRLVTGKPALGITKEVKYALDSGKLKFLLDPLAGNWPLVLAEELVRLALRCCGMNRKNRPNLYPDVWRVLEPMRASSGDTNTFELGSQGLCQPPPYFICPIFLEVMQDPHVAADGFTYEAEAIRAWLESGHETSPRTNSRLSHRNLVPNHSLRHAIQDWLQKSLI
Length879
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.06
Grand average of hydropathy-0.377
Instability index45.88
Isoelectric point6.20
Molecular weight97891.27
Publications
PubMed=22057054

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06993
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.92|      30|      30|     332|     361|       1
---------------------------------------------------------------------------
  306-  329 (29.66/15.45)	.....PNLISGGSE.N.VLDLNLNGLSQTNQ
  332-  361 (51.60/31.80)	HHSSPPSVLDGGMD.DAVYDQIEQAMAEAAN
  364-  392 (38.66/22.16)	RDAYQETVRRGKAEkDAI.DAIRRAKA.AEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.42|      49|      53|     517|     569|       2
---------------------------------------------------------------------------
  520-  569 (79.43/57.54)	HPSL..KIGEGGYG.SIFKGILHHTEVAIKMLNPDSTQgPLEFQQAVEVLSKL
  571-  622 (77.99/44.02)	HPNLitLIGACPESwTLVYEYLPSGSLEDRLNCKDNTP.PLSWQTRVRIAAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.86|      28|      53|     396|     423|       3
---------------------------------------------------------------------------
  396-  423 (47.34/34.70)	EELELR..............KELEEEAKKAN.......EELDNMKRWTD
  431-  479 (30.52/19.68)	LALDQKsslenqiastdlmiKELEQKITSAEnmlqsykDELDDMQMQRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.64|      50|     608|     189|     263|       4
---------------------------------------------------------------------------
  130-  180 (81.22/56.15)	CQRMGVRAGKLYIEKDC.IEKGIVELISQYgIQKLVMGAASDKYHSRRMTAL
  196-  246 (82.42/75.87)	CHILFICKGFLIHTRDSnLDRGNVEAVSPL.VQKKANSEDGHSPHSRSQSVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06993 with Med32 domain of Kingdom Viridiplantae
Unable to open file!