<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06992
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MSNRYQDDWLKTSANSLQHWEKAPLEPYALQKPVTYHVVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQALGNQMEIESAKLSSCGFVLLDCPQSMKIESSNTSLVGSVSDYFLSLSNGWDLASYLKSLSKALRGLKIGSCFSTNPSEGSNSSCLVIYVVCPFPDPTAILQTVIESSVAIGSVVQQSDRERRSSLHSQVVKALSGLATVDEASAANILVLSGFSIPKLVLQIVTVDAIFRVTSPSVSELVILKETAFTVYSKARRISRGISSDFSQSAFSSRSHSVLTQMPSPISGMWKDCVGPRMAGHSLPREGDIDASLRPGTWDNSWQSTRTGGLNCDPSRTGDIFLHDEIRYMFEPLFILSESGSPENGISVIGSPTSESSKALTDDSSGSYLQNTSTAGSLESASSTDGSGSDPKTPPSLHCCYGWTEDWRWLVCIWTDSRGELLDCNIFPFGGISSRQDTKGLQCLFVQILQQGCLILQSCDPGLAKPRDFVIARIGGFYELEYLEWQKAIYSVGVSEMKRWPLQLRKSMSDGMSATSNGSSLQQPDMSLIPERTLPSSPSPLYSPHTKSTGFMKGGLGQPAARKQLMGGHSVVDNSRGLLHWAQSISFVAVSMDHTLQLVLQADSSTPAKAFGETESGSDLYILGYIEGFTPVKSLGSTSSAYILIPSPSMRFLPPTGLQLPTCLTAESPPLAHLLHSKGSALPLSTGFVVSKAVPSMRKDYRSNLKEEWPSILSVSLIDYYGGANIPQEKIVRGVNKQGGRSLNWEAKDFEIETHLVLESLAAELHALSWMTVSPTYLERRTALPFHCDMVLRLRRLLHFADKELSKQSEKS |
Length | 843 |
Position | Kinase |
Organism | Cajanus cajan (Pigeon pea) (Cajanus indicus) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade>
NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.156 |
Instability index | 60.63 |
Isoelectric point | 6.02 |
Molecular weight | 91853.18 |
Publications | PubMed=22057054
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP06992
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 300.96| 78| 359| 92| 191| 1
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107- 191 (120.28/66.81) SLVGS.VSDYFLSLSNG.WDLASYLKSLSKAlRGL...KIGSCF..............................STNPSEGSNSSCLviyvvcPFPDPTAILQTVIESSVAIGSVV.QQSD
378- 447 (105.22/58.92) SVIGSpTSESSKALTDD..SSGSYLQNTSTA.........GSLE..............................SASSTDGSGS..........DPKTPPSLHCCYGWTEDWRWLVcIWTD
468- 568 (75.46/30.84) DTKGL.QCLFVQILQQGcLILQSCDPGLAKP.RDFviaRIGGFYeleylewqkaiysvgvsemkrwplqlrksmSDGMSATSNGSSL......QQPDMSLIPERTLPSS............
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.45| 14| 19| 679| 692| 2
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679- 692 (27.42/16.30) PSMRFLPPTGLQLP
701- 714 (25.04/14.22) PLAHLLHSKGSALP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.07| 11| 22| 637| 647| 7
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637- 647 (20.39/10.87) TPAKAFGETES
661- 671 (19.68/10.26) TPVKSLGSTSS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 73.69| 22| 29| 296| 320| 8
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299- 320 (44.65/34.79) GMWKDC.VGPRMAG.HSLP.REGDI
327- 351 (29.04/12.37) GTWDNSwQSTRTGGlNCDPsRTGDI
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