<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06989

Description Pre-mRNA-processing factor 40 isogeny A
SequenceMSNNPQYPGLQPLRPPIAGSVDPPRNFVPPMPVQFRPVVPTQQSQQFMSMPSQHYQHQPVGHGGVPMMGVGMPPQNQQPQFTQPIQQLPPRPSPQLPPPSQAIPLPVARPNMHIPSESMMPQPDSQAPNGYTPGLGGPGMPLSSSYTFAPSTYGQVQTNFNSTGQFQPVPQIHALTGSSSHSITTGATLQSNGGQPPVAPVTSSGAIVQPQLSKNGSTDWIEHTSATGRKFYYNKKTKVSSWEKPFELMTPIERVDASTNWKEYTSPDGRKYYYNKVTKESKWSIPEELKLAREQVEKAIVSGTRPEALLNSHTQPSPTPSVTEATPNADNSSLTSQGEPSSPVSVAPVVTTCISNLQSAMPSGPSTSPSATPIAGTKVDELEAPVNTVTPSDTSVGSDKAVVTDINTARTPMNDANNDSSQDTLGSADGVPAEDKEDGKNDTIGEKSNDVAAETKAVEPESLVYANKMEAKDAFKALLESVNVGSDWTWDRAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKQEAEEKRTKQKKAREDFKKMLEESTDLTSSTRWSKAASIFENDERFKAVERDRDRRDMFESFLEELLNKERARVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYIAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDAVKLAKITLLSTWTVEDFKLALSKDISSPPISDFNLKVVFDELLERVKEKEEKEAKKRKRLADDFFHLLYTTKDITVSSKWEDCRPLVEDSQEFRSIGDESLCKEIFEEYSAQLKEEAKESDRKRKEERAKKEKDREERERRKVKQRREKEGGRERGKDEAHKKDKADSDSMELTEIQSSKDNKRSEDDNRKQRKQRQSPEQEMDKEKTKKSHGHGTDRKKSRRHSSSHESDEGRHKRHKRGHRREGDHGDLEDGEFGDDVDRW
Length1016
PositionUnknown
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.06
Grand average of hydropathy-1.104
Instability index58.51
Isoelectric point6.58
Molecular weight115557.36
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06989
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     258.23|      46|      46|      29|      74|       1
---------------------------------------------------------------------------
    1-   24 (33.51/14.65)	.....................MSNNPQYPGLQP...LRP...P.IAGSVDPP
   29-   74 (94.72/55.93)	PPM..PVQFRPVVPTQQSQQFMSMPSQHYQHQP...VGHGGVP.MMGVGMPP
   79-  102 (25.00/ 8.91)	PQFtqPIQQLP..P.RPSPQ.LPPPSQA........................
  104-  141 (47.99/24.41)	.PL..PVA.RP.........NMHIPSESMMPQPdsqAPNGYTPgLGGPGMP.
  340-  376 (57.01/30.49)	PSS..PVSVAPVVTTCISNLQSAMPSG.P...S...TSPSATP.IAG.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     232.93|      40|      40|     217|     256|       2
---------------------------------------------------------------------------
  153-  173 (22.40/ 7.79)	...............YGQVQTNFNS.TGQFQ...PVPQIH
  175-  202 (42.38/21.17)	LTGSSSHSITTG.......ATLQSNGGQP.....PVAPVT
  217-  256 (73.82/42.23)	STDWIEHTSATGRKFYYNKKTKVSSWEKPFELMTPIERVD
  258-  297 (68.27/38.52)	STNWKEYTSPDGRKYYYNKVTKESKWSIPEELKLAREQVE
  302-  327 (26.07/10.25)	........SGTRPEALLNSHTQPSPTPSVTE.ATP.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     395.35|      65|      65|     443|     507|       3
---------------------------------------------------------------------------
  378-  445 (60.89/36.54)	.KV...DELEAPVNTVTPsDTSVGSDKAVVTDINTArtpMN.DAN.N.DSSQDTLGSADGVPAEDKEDG......KN.......D...........TIG
  446-  510 (94.68/61.40)	EKS...NDVAAETKAVEP.ESLVYANKMEAKDAFKA...LL.ESV.N.VGSDWTWDRAMRVIINDKRYG......AL.......K...........TLG
  511-  589 (78.76/49.68)	ERKqafNEYLNQRKKQEA.EEKRTKQK.KAREDFKK...MLeEST.D.LTSSTRWSKAASIFENDERFK......AV.......ErdrdrrdmfesFLE
  590-  652 (71.04/44.00)	ELL...NK...ERARVQE.E.....RKRNIME.YKK...FL.ESC.DfIKASTQWRKVQDRLEADERCSrlekidRL.......E...........IFQ
  659-  689 (29.41/13.38)	EKE...EE...EQKKIQK.EELRKTER.KNRDEFRK...LM.E........................................................
  797-  860 (60.58/36.31)	...........ERVKEKE.EKEAKKRKRLA.DDFFH...LL.YTTkD.ITVSSKWEDCRPLVEDSQEFR......SIgdeslckE...........IFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.01|      42|      46|     897|     942|       5
---------------------------------------------------------------------------
  897-  925 (37.25/15.45)	..............KQRREKEGGRERGKDEAHKKDKADSDSME
  930-  972 (62.23/37.47)	QSSKDNKRSEDDNrKQRKQRQSPEQEMDKEKTKKSHGHGTDRK
  973- 1014 (64.53/30.96)	KSRRHSSSHESDEgRHKRHKRGHRREG.DHGDLEDGEFGDDVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.10|      15|      15|     756|     770|       7
---------------------------------------------------------------------------
  756-  770 (25.54/16.96)	LAKITLLSTWTVEDF
  772-  786 (25.57/16.99)	LALSKDISSPPISDF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06989 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IVSGTRPEALLNSHTQPSPTPSVTEATPNADNSSLTSQGEPSSPVSVAPVVTTCISNLQSAMPSGPSTSPSATPIAGTKVDELEAPVNTVTPSDTSVGSDKAVVTDINTARTPMNDANNDSSQDTLGSADGVPAEDKEDGKNDTIGEKSNDVAAETKAVEPESLVY
2) LKEEAKESDRKRKEERAKKEKDREERERRKVKQRREKEGGRERGKDEAHKKDKADSDSMELTEIQSSKDNKRSEDDNRKQRKQRQSPEQEMDKEKTKKSHGHGTDRKKSRRHSSSHESDEGRHKRHKRGHRREGDHGDLEDGEFGDDVDRW
3) MSNNPQYPGLQPLRPPIAGSVDPPRNFVPPMPVQFRPVVPTQQSQQFMSMPSQHYQHQPVGHGGVPMMGVGMPPQNQQPQFTQPIQQLPPRPSPQLPPPSQAIPLPVARPNMHIPSESMMPQPDSQAPNGYTPGLGGPGMPLSSSYTF
4) VQTNFNSTGQFQPVPQIHALTGSSSHSITTGATLQSNGGQPPVAPVTSSGAIVQPQLSKNGSTDW
300
866
1
156
465
1016
148
220










Molecular Recognition Features






MoRF SequenceStartStop




1) EFGDDVDRW
2) GRHKRHKR
1008
986
1016
993