<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06985

Description Uncharacterized protein (Fragment)
SequenceYCVVFVVYVVMEGVAEMTKVAQQKGSDPLLWALQMYSNLNSAGESLPSLELAEFLVSYICWDNNVPILWKFLDKALMLHIVPPMLLLALLSVRVIPCRHVQPAAYRLYLELVKRHAFELKSQINRPDYQKVMKSIDAVLHLSNIFGMSQSEPGILVVEFIFSIVWQLLDASLDDEGLLEFTPDKKSRWAILYQDMELDRHDNYSDKKTEQHEKLQNANTLMAVEMIGQFLQDKISSRILCLARQNLPVHWLSFNQRLQLLGANSLALRKSRTLSPEALLQLTSDSCMVLSRECKTNSQQKFQTVMSFEYLSSSASLCHGASHSALWIPLDLVLEDAMDGYQVSATSAIETISGLIKTLRAINGTSWHDTFLGLWLATLRLVQRERDPIEGPMPHLDTRLCMLLCIIPLVVGDLIEEEEGTPVDEKDNGPTDCWIEKKISGKCRHDLVSSLQVLGDYQSLLTPPQSVGAAANQAAAKAMLFVSGITIGSAYFDCLSMTEMPVDCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGRINQIPQCMPTQVPGWSSFMKGAPLTSVMVNALVSSPATSLAELEKIFEIAIGGSEDEKISAAAILCGASLIRGWNIQEHTVHFILRLLSPPVPAENTEGNSYLINYAPILNVLFVGIASVDCVQIFSLHGLEIFSRQIYCLRLVLMFSLYRNLVCIHKLGLLLVPQLACSLMPICEVFGSCVPNISWSLTSGEEISAHAVFSNAFILLLKLWRFNRPPLEYGIGDVPTVGSQLTPEYLLLVRNSHLMSAGNIHKVRNRRRLSEIASLSSPNSVFVDSFPKLKVWYRQHQACIASTLSGLVHGTPFHQIVEGLLNMMFRKINRGSQTTITSGSSSSSGPANEDASIGPKLPAWDILEAIPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIISYFSAEVTRGVWKPVFMNGTDWPSPAANLLNVEGQIRKILAATGVDVPSLASGDSSPATLPLPLAAFTSLTITYKVDKASERFLNLAGQTLESLAAGCPWPCMPIVASLWTLKAKRWSDFLIFSASRTVFLHNSDAVVQLLKSCFTATLGMNTSPISCSGGVGALLGHGFKSHLCGGICPVAPGILYLRAYRSIRDIVFLTEEIVSILMHSVREIVCNGLPRERLEKLKATKDVLCGAFAWGVDSSSSASKRRPKVLGIHMEFLASALDGKISLGCDSATWRAYVSGFVSLMVGCTPNWVLEVDVHVLKRLSNGLRQLNEEELALALLGVGGVGTMGAAAELIIDTEI
Length1281
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.08
Grand average of hydropathy0.228
Instability index45.21
Isoelectric point6.18
Molecular weight140480.67
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06985
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.28|      30|     168|     459|     493|       3
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  459-  493 (49.00/42.97)	LLTPP....QSVGAA..ANQAAAKAMLFVsgitiGSAYFDC
  622-  657 (45.28/28.24)	LLSPPvpaeNTEGNSylINYAPILNVLFV.....GIASVDC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.76|      15|      17|     345|     359|       4
---------------------------------------------------------------------------
  345-  359 (25.38/12.94)	TSAIETISGL.IKTLR
  364-  379 (24.38/12.18)	TSWHDTFLGLwLATLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     267.32|      74|     491|     540|     614|       5
---------------------------------------------------------------------------
  540-  614 (123.66/73.16)	PqCMP.......TQVPGWSSFMKGAPLTSVMVNALV...SSPATSLAELEKIFEIAIGGSEDEKISAAAILC..GASLIRGWNIQEH
  976- 1024 (45.74/20.91)	...........................TGVDVPSLAsgdSSPATLPLPLAAFTSLTITYKVDKASERFLNLA..GQTL.........
 1034- 1106 (97.92/53.41)	P.CMPivaslwtLKAKRWSDFLIFSASRTVFLHN.....SDAVVQL..LKSCFTATLG......MNTSPISCsgGVGALLGHGFKSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.93|      35|     494|     390|     429|       6
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  390-  429 (60.91/46.72)	GP.MPHLDtrlcmLLCIIPLVV.........GDLIEEEEGTPV.DEKDNGP
  881-  926 (49.02/26.95)	GPkLPAWD.....ILEAIPFVVdaaltacahGRLSPRELATGLkDLADFLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.75|      61|     494|     250|     315|       9
---------------------------------------------------------------------------
  250-  315 (88.14/84.83)	WlSFNQRLQLLGANSLALRKSRtLSPEALLQLTSDSCMVLSRECKTNSQQKFQTVMSfeyLSSSAS
  747-  807 (106.61/80.37)	W.RFNRPPLEYGIGDVPTVGSQ.LTPEYLLLVRNSHLMSAGNIHKVRNRRRLSEIAS...LSSPNS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06985 with Med33 domain of Kingdom Viridiplantae
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