<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06979

Description Transcription elongation regulator 1
SequenceMASPAWLPQDPQPQPPVSGETPLPVPSSAPATPSSAPPPPPPPPFAYGVLHSVNASVSSQHSSTHPAMKSNSSANPMAVQPQVPGVSSHAAPSFSYNIPQSGASFSSNLHHAQSNTNMSDSAAQDVSKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTALPFPVHPLMPTPGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSMPAMAAPPQGVWLQPPQMSGVLRPPYLQYPAPFPAPFPFPARGVALPAVPIPDSQPPGVTPVGAVGGTSTLVSGHQLRGTIALQTEVISGPADDKKKLNAVETQNQDAASNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGEPHQVSAQPTPVSMTDLPGTDWMLVSTSDGKKYYYNNRTKTSCWQIPNEVTELKKKQDGDVTKDHLMSVPNTNVLSDRGSGLVTLNAPAINTGGRDAAALKSSSQQTSSSALDLIKKKLQDSGTPVASSAIPAPSVQTGSESNGSKIVESTTKGLQVDTNKDKQKDTNGDANISDTSSDSEEEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQRAAIEGFKQLLDEALEDINHNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAAGFKSMLKERGDIIFNSRWSRVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEYAAERETKAKREEQASWTESKPKLEKDPQGRATNSDLDPTDTEKLFREHVKMLQERCAHEFRVLLAEVLTSEAASRESDDGKTVLNSWSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHDSREDKHKDSKPRNSLESGRSHERK
Length918
PositionUnknown
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.06
Grand average of hydropathy-0.767
Instability index57.63
Isoelectric point7.72
Molecular weight100065.54
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06979
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     237.50|      40|      64|     671|     710|       1
---------------------------------------------------------------------------
  603-  643 (41.70/24.80)	.DPRFKA....IPsysarRSLFEHY...VKTRAEEER.K......E....KRAAQRAAIE
  671-  710 (66.67/44.43)	NDPRFEA....LD.....RKEQEHL...LNERVLPLK.K...AAEE....KAQAMRAAAA
  738-  780 (53.20/33.85)	DDPRYKS....VR.....HEDREVL...FNEYISELK.AaeyAAER....ETKAKREEQA
  791-  839 (42.51/25.44)	KDPQGRAtnsdLD.....PTDTEKL...FREHVKMLQeR...CAHEfrvlLAEVLTSEAA
  862-  894 (33.41/18.29)	SDPRYNK....VP.....RKEREALwrrYAEDMLRRQ.K...ASHD..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     136.68|      23|      25|     132|     154|       2
---------------------------------------------------------------------------
    8-   40 (29.32/ 9.65)	PQDPqpqppvsgetPLPVPS.SAPATPSS.A....PPPP
   41-   62 (25.80/ 7.54)	PPPP.........fAYGVLH.SVNA..SV.S....SQHS
  132-  150 (26.71/ 8.08)	..............ASSIPH.SVPAHTST.S....IMPP
  224-  251 (27.88/ 8.79)	PTAP..........QKGLPYpSMPAMAAP.PqgvwLQPP
  377-  399 (26.97/ 8.24)	PA.G..........FKGEPH.QVSAQPTPvS....MTDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     176.24|      47|     112|     154|     203|       3
---------------------------------------------------------------------------
   65-  103 (42.97/14.39)	...................................................................H....PAMksnssanPMAVQPQVPGVS.......SHAAPSFSYNIPQSGA
  154-  203 (84.00/44.84)	PN.................................................YrPATswMPTALPFPVH....PLM.......PTPGNPGPPGLA.......SSAIISSNPAAPSTGT
  213-  315 (49.26/18.27)	PNmptsaiasdptapqkglpypsmpamaappqgvwlqppqmsgvlrppylqY.PAP..FPAPFPFPARgvalPAV.......PIP.DSQPPGVTpvgavggTSTLVSGHQL...RGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.59|      18|     122|     719|     737|       4
---------------------------------------------------------------------------
  719-  737 (28.10/20.64)	ERGDIIFNSrWSRVKESLR
  844-  861 (31.49/18.37)	DDGKTVLNS.WSTAKRVLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.44|      41|      61|     422|     462|       5
---------------------------------------------------------------------------
  422-  459 (60.25/37.26)	.......................KTSCWQIPNEVTEL.KKK.QD.GDVTKDHLMSVPNTNVLSD
  460-  523 (40.35/22.30)	RGSglvtlnapaintggrdaaalKSSSQQTSSSALDLiKKKlQDsGTPVASSAIPAPSVQTGSE
  525-  552 (19.84/ 6.88)	NGS...............kivesTTKGLQVDTN.KDK.QKD.TN.GD.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.67|      18|      50|     352|     369|       6
---------------------------------------------------------------------------
  352-  369 (34.92/24.65)	WTAHKTEAGIIYYYNAVT
  404-  421 (35.76/25.41)	WMLVSTSDGKKYYYNNRT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06979 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTPVASSAIPAPSVQTGSESNGSKIVESTTKGLQVDTNKDKQKDTNGDANISDTSSDSEEEDSGPSKEECI
2) IPNEVTELKKKQDGDVTKDHLMSVPNTNVLSDRGSGLVTLNAPAINTGGRDAAALKSSSQQT
3) LPFPVHPLMPTPGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSMPAMAAPPQGVWLQPPQ
4) LWRRYAEDMLRRQKASHDSREDKHKDSKPRNSLESGRSHERK
5) MASPAWLPQDPQPQPPVSGETPLPVPSSAPATPSSAPPPPPPPPFAYGVLHSVNASVSSQHSSTHPAMKSNSSANPMAVQPQVPGVSSHAAPSFSYNIPQSGASFSSNLHHAQSNTNMSDSAAQDVSKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWM
6) TKAKREEQASWTESKPKLEKDPQGRATNSDLDPTDTEKL
7) YDKPAGFKGEPHQVSAQPTPVSMTDLPGTD
505
428
167
877
1
772
374
575
489
252
918
163
810
403










Molecular Recognition Features






MoRF SequenceStartStop




1) ALWRRYAEDML
876
886