<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06978

Description U-box domain-containing protein 33
SequenceMAMDEYQCDQNVHVAVGKSIKKASTLLQWCFTHFSKAQIRLIHVYQPSTKIPTLLGKLPASHASPEVVSAYRIEEREEIKRLMEKYLSLCRKAKVKASSVIGEADQVQKGIVDLVTVHNIRKLVIGAIPENCMKVKRNSSKANYAAQNAPPFCEIWFVCKGKHIWTREASETPRSLSSCAQPKTTTAEGLSCRSFQYGTNELLHSECLQSNSTIIARNMVQREIIETEATFSSKSSGCNSHGSPQHSAGWYLDTHPEFEEETIDSQLIEAKREANAATDEALAELLKSKRLEVKATEAISKVNLFEYAHAQEVKLRKEAEDALRATIQEQQMFLDEKEEIDSDLERIMRSISLLGSCAHETNHKREEAANELLLIQASISNLRHEKQQIRRQKMEALHWLERWKSCEQVEADHCNGVIGFAEEFPELSEFSLSDLQNATCNFSESFKIKEGGYGSIYKGEMLGRTVAIRKLHPHNMQGSTEFHQEVQVLGSLQHPHLLTLLGVCPEAWSLVYEYLPNGNLQDHLYQKSSLLPLTWNIRARWIVEIAKTLCFLHSSKPQTIIHGGLTLETILLDSSFSCKICEFGLVKEESLYLPSFCFSTEPKGSFSYTDPEFHRTGVLTPKSDIYSFGIIILQLLTGRTPFGLAGEVRRAVSSGKLSSILDSSAGEWHSTVATRLVELGLQCCQLNSRDRPELTPSLVRELEQLHVSEERPVPSFFLCPIFQEIMHDPQVAADGFTYEGKAINEWLENGHETSPMTNLKLSHLHLTHNHALRLAIQGWLCKS
Length783
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.07
Grand average of hydropathy-0.333
Instability index48.62
Isoelectric point6.19
Molecular weight88273.55
Publications
PubMed=22057054

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06978
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.22|      36|     231|     513|     550|       1
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  513-  550 (60.61/35.39)	EYLPNGNLQDHLYQ.KSSLLPLTWNIRARwiVEIAKTLC
  745-  781 (61.61/30.02)	EWLENGHETSPMTNlKLSHLHLTHNHALR..LAIQGWLC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.84|      13|      19|     412|     424|       2
---------------------------------------------------------------------------
  412-  424 (25.45/17.73)	DHCNGVIGFAEEF
  434-  446 (24.38/16.66)	DLQNATCNFSESF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.08|      64|     366|     176|     249|       4
---------------------------------------------------------------------------
  176-  249 (94.37/81.53)	LSScAQPKTTTAEGLSCRSFqygtneLLHSeclQSNSTIIARNMVQREIIETEA.TFSSKSSGCNSHGSPQ.HSAG
  552-  617 (105.71/63.97)	LHS.SKPQTIIHGGLTLETI......LLDS...SFSCKICEFGLVKEESLYLPSfCFSTEPKGSFSYTDPEfHRTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.52|      19|      39|       6|      24|       5
---------------------------------------------------------------------------
    6-   24 (33.19/22.47)	YQCDQNVHVAVGK.SIKKAS
   45-   64 (29.33/19.03)	YQPSTKIPTLLGKlPASHAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.84|      19|      47|     336|     357|       6
---------------------------------------------------------------------------
  336-  354 (30.99/28.80)	EKEEIDSDLERIMRSISLL
  364-  382 (29.84/15.89)	KREEAANELLLIQASISNL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06978 with Med32 domain of Kingdom Viridiplantae
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