<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06968

Description ATP-dependent DNA helicase hus2/rqh1
SequenceMFSVPPKKPCHEEPLPGNATFGVQQSENIQGSRRVQVEKAWIALSSLQNFSRNYVQPGKSVEVTPQLREDRRTTSFPGGYENDKNRCPDVSTTPIVINHISQGLVGSVTSVNNHTKYTGQINESSKCMIADIGDDDLLGNIDVDQIVEKYQSTCTPKPSISKLPPTTPTAYNDNVLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNSENLNSTQIAKLRNDRSQLNKQIQQLEQYINCGNLNEERQKSHQFASTAPPTSFMYETPQQTVLCNGPKRDAYMGNGTYGSSFQCLPSFSVDNYSMSSAPVEREAFVPKIIEVNYIEGSGDKRWSSRDFPWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLANIPAAYLSANMEWAEQQEILRELNSDCCKYKLLYVTPEKVAKSDVLLRQLDNLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLRECGHKCAFYHGTMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMLSQGAIEQSPMTSGYNRSNMTNSGRVLETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLMGQRFSSSHILEVYRGSLSQLVKKHRHETVSLHGAGKRLGKGEASRVLHHLVVEDFLVEEVKKSDYYGSVSSILKVNEPKVRNLYAGQRIILRFPSSVKASKPGKSDITPAKGSLTSGKPNVTLIDTPPEPQTEVDLNLSAKLYTALRMLRTSLVREAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLEIIENTINEYYKLEKVSSGSKGSADSCKRRRGTNGGLNANDEDDDALTNSTGRSKRRTVKKQTRKDVVYDSPEEDYFHGCSDEDLDFDVIEIDALDQVTCKNAAGRVLPQWTAS
Length1097
PositionUnknown
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.07
Grand average of hydropathy-0.494
Instability index47.32
Isoelectric point7.63
Molecular weight122976.05
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06968
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.53|      35|     262|     170|     207|       1
---------------------------------------------------------------------------
  170-  207 (53.39/56.21)	AYNDNVLpPELCLDCIHgYK.LGLCPEAASH....LQELkDNL
  423-  462 (53.15/38.60)	AEQQEIL.RELNSDCCK.YKlLYVTPEKVAKsdvlLRQL.DNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     180.74|      58|     262|     311|     373|       2
---------------------------------------------------------------------------
  311-  373 (89.17/74.38)	YSMSSAPVEREAfvPKIIEVN.....YiEGSGD..KRWSSRDfPWTKElEVN...NKRVFGNHSFRPNQREVI
  572-  639 (91.57/56.88)	YCLSRMDCEKVA..EKLRECGhkcafY.HGTMDpaQRASVQK.QWSKD.EINiicATVAFGMGINKPDVRFVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.56|      19|     343|     648|     666|       3
---------------------------------------------------------------------------
  648-  666 (37.74/16.44)	EGYHQECGRAGRDGQRSSC
  992- 1010 (33.82/14.18)	EYYKLEKVSSGSKGSADSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.06|      14|      15|     874|     887|       4
---------------------------------------------------------------------------
  874-  887 (24.70/15.85)	SVKASKPGKSDI.TP
  891-  905 (20.36/11.71)	SLTSGKPNVTLIdTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.14|      22|      23|     755|     776|       5
---------------------------------------------------------------------------
  755-  776 (33.32/23.75)	KITSFIEKDVTEIAK.QLVELVK
  778-  800 (31.82/22.35)	MGQRFSSSHILEVYRgSLSQLVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.64|      11|      23|     720|     732|       8
---------------------------------------------------------------------------
  720-  732 (17.03/11.97)	SYCENdvDCRRLL
  744-  754 (22.61/10.01)	STCQK..TCDNCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.65|      18|     747|     103|     120|       9
---------------------------------------------------------------------------
  103-  120 (32.67/24.01)	GLVGSVTSVNN...HTKYTGQ
  845-  865 (25.98/17.44)	GSVSSILKVNEpkvRNLYAGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.48|      12|      15|     235|     246|      11
---------------------------------------------------------------------------
  235-  246 (20.46/16.09)	QLNKQIQQLEQY
  251-  262 (21.02/16.77)	NLNEERQKSHQF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06968 with Med34 domain of Kingdom Viridiplantae
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