<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06967

Description Uncharacterized protein (Fragment)
SequenceSVVSWCGKLNAIACASETCARIPSSTGNPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLIANFHGRVTIWTQPSQGPANRVLDTSCWLQEHEWRQDIAVVTKWLSGVSLYRWLSSKPSAPANSRSTFEEKFLSQQNQTAESYLNLVLLKKFIIYIFILILKSSTKWPNFLCVCSVFSSGSVQLHWSQWPPQNATPPKWFCTSKGPLGCGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVTPRTSTNNGVPPPLNSPNWTGFSPLVAYLFSWQDYLLSEEKQGKNQTNQNLGDSISLHCSPVSNFSAYVSPEASAQSAATTTWGSGVTAVAFDPTCGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQQVVLHPIFGNPTSSMGGQPPMQTVWQTKVDLSIPPTNDFKNHQAHAVGINTDMQKVSEFGFDKSKRVNFDPLDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFAPVDNYQISVGSVIAAPAFSSTSCCSASVWHDTNKGQTILKIIRVLPPAIPTSQVKTNSSNWERAIAERFWWSLLVGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYCPSLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALINPSAFVPDPWQVSGETLSSIDPEAVAVEPALVPCVQAYVDSILDLASHFITRLRRYASFCRTLASHAVTAGTGNNRNMVASPAQSTATPATSQGGQNGTTSSSGSTQVQAWVQGAIAKISSTTDGVSNPAPNPPISSPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLHRYVGGVQRTAETNTQKPQPNAPAPGKVEEIAKPVSTVGKPDDSQAGRVSHLVPASKGGEEPSPGRSRIGTGNAGQGYTFEEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPDDLDSANDAAKLVSLNPPDSSSLENCDVYYGSNGLLPRKRRMSERDAAFGLNTSMGLGAYLGIMGSRRDVITALWKTGPDGIWYKCIRCLRQTCAFASPSASSLRSQNDLEIWWISRWAHGCPMCGGTWVRVV
Length1178
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.08
Grand average of hydropathy-0.130
Instability index43.59
Isoelectric point6.93
Molecular weight127854.62
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06967
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     501.18|     135|     171|     225|     370|       1
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  225-  367 (227.28/128.16)	GPSgIMAADAIITDSGAMHVAGVPIV.NPSTivvweVMPG.PgnGFQVTPRTSTNNGVPPPLNSPNWTGFSPLVAYLFSWQDYLLSEEKQGKNQTNQNLGDSISLHC.SPVSN........................FSAYVSPEASA...QSAATTTWGSGVTAVAFD.PT..CG
  389-  541 (193.69/93.69)	GPS.ITGWRVQRWESSLQQVVLHPIFgNPTS.....SMGGqP..PMQTVWQTKVDLSIPPTNDFKNHQAHA..VGINTDMQK..VSEF..GFDKSKRVNFDPLDLP..SDVRTlarivysahggeiaiaflrggvhiFS...GPNFAP...VDNYQISVGSVIAAPAFS.STscCS
 1101- 1171 (80.21/33.20)	....................................................................GLGAYLGIMGSRRDVITALWKTGP........DGIWYKCiRCLRQ........................TCAFASPSASSlrsQNDLEIWW...ISRWAHGcPM..CG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     501.39|     151|     157|     754|     909|       2
---------------------------------------------------------------------------
  754-  909 (248.32/175.97)	GNNRNMV.ASPAQSTATPATSQGGQNGTTSSSGSTQVQAWVQgAIAKISSTTDGVSNPAPNPPISSPSSFMPISINTGTFPGTPAV..RLIGDCHFLHRLCQLLLFCFFFRRTQLHRYVGGVQRtaETNTQKPQPNAPAPGKVEEIAKPVSTvgKPDDS
  912- 1065 (253.07/163.42)	GRVSHLVpASKGGEEPSPGRSRIGTGNAGQGYTFEEVKVLFL.VLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVveASLGPHMNMPRPRGADAAGLLLRELELHPPAEEWHR..RNMFGGPWSDPDDLDSANDAAKLVSL..NPPDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.65|      41|     424|     182|     224|       4
---------------------------------------------------------------------------
  182-  224 (79.94/40.64)	WPNFLCVCSVFSSGSVQLH.........WSQWPpqNATPPKWFCTSKGPLGC
  596-  645 (68.71/29.81)	WDAVGCTQSAAEDGIVSLNsviavldadFHSLP..SAQHRQQYCPSLDRIKC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06967 with Med16 domain of Kingdom Viridiplantae
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