<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06965

Description Uncharacterized protein
SequenceMNQIGTATEAEPLAQSPQDTPNASDKPDSAAAVAAEEQDLAPDEKPPHDPQPMEEDPVNPATVFSIKLKQPRSNLLHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPISCPRALLIANFHGRVTIWTQPSQGPANLVRDTSCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSASANTKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQSGTTPKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQVAPKTISNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFRNPTSSMGGQPPMQTVWQSKVDLSIPPTNDFKNHQSPAIGMAADMQKASESVSDKSKRVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGGVHVFSGPNFTPVDNYQINVGSAIAAPAFSSTSCCSASVWHDSSKNCTILRIIRVLPPSIPISQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHRQQYGPSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGKGIESALINSSALVPELWQASAETLSSIDPESMAVEPALIPSIQVCFGYSFSLACLFHELFFDIFIHLIIFISTISCFLIVLIVKVLFMMLIDLCRRTAGLQHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVDFANDAPKLVNSDPLDFSPLEHCDVYYGTQRLWPKKRRMSERDAAFGLNTSVGLGGYLGIMGSRRDVVTATWKTGLEGVWYKCVRCQRQTSAFASPDAAASPDQNEREIWWISRWAYGCPMCGGTWARVV
Length995
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.09
Grand average of hydropathy-0.091
Instability index47.80
Isoelectric point5.68
Molecular weight108881.52
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06965
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.65|      18|      29|     428|     445|       1
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  428-  445 (34.87/19.02)	MGGQPP.......MQTVWQSKVDLS
  453-  477 (24.78/11.62)	KNHQSPaigmaadMQKASESVSDKS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     298.50|      89|     194|      63|     155|       2
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   63-  155 (153.20/92.65)	VF...SIKLKQPRSNLLHKMSVPE.LCRNfSAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPE.RPTECAVFNViadSPRDSVQFIEW.SP
  255-  349 (145.30/77.92)	VFssgSVQLHWSQWPPSQSGTTPKwFCTS.KGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEvTPGPGNGFQV...APKTISNFSAYvSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.55|      30|     171|     628|     661|       4
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  628-  661 (45.60/37.31)	LDADFHSLPSVQHrQQYGPSLDRIKCRlleGSNA
  803-  832 (54.95/32.41)	IDGNYTVLPEVVE.ASLGPHMNMPRPR...GADA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.26|      23|      29|     721|     749|       5
---------------------------------------------------------------------------
  721-  749 (33.77/40.89)	IPSIqVCFgysfsLACLFHELFFDIFIHL
  753-  775 (39.49/26.38)	ISTI.SCF.....LIVLIVKVLFMMLIDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.90|      14|     170|     201|     214|       6
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  201-  214 (26.50/14.64)	IAVVTKWLSGVSPY
  356-  368 (17.27/ 6.96)	.AATTTWGSGVTAV
  379-  392 (23.12/11.83)	IAVVIVEGQYMSPY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.88|      20|     378|     580|     609|       8
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  580-  609 (29.62/39.44)	ANSSTWERAIaerfWWsllvgVDWWdAVGC
  965-  984 (44.27/25.19)	ASPDQNEREI....WW.....ISRW.AYGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.30|      16|      27|      12|      27|       9
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   12-   27 (28.84/13.19)	PLAQSPQDTPNASDKP
   42-   57 (32.46/15.72)	PDEKPPHDPQPMEEDP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06965 with Med16 domain of Kingdom Viridiplantae
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