<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06960

Description U-box domain-containing protein 33
SequenceMELLKPLHPHHAPILHLPFHALPSSSQQLPLPMLPKVHVAAGKSLHKTLPLLRWTLNHFPNAEIVILHAFQPSLTIPTLLGKLPASQASPEVVSAFRKVEREQIMKLLDKYLTICQAARVKACIIVTEADQVQKGIVDLVVKHNIQKLVIGAVPENCIKVKRNSGKANYTAKNAPPFCEVWFIYKGKHIWTREASEAPCSSPSFTQPEITTTESLRCRSFQYGKNELFNSEYLQPSSVRTTIGSGFRSLVQGEIIETEATFSSKPSSCSSHCHCSPQNSSGDYLHTYLEDMEEMIDKQLRETKKEAEAVTDEAFAGLLKCKRLEVEAMEAIRKVNLFESAHACEVKLRKEAEDVLRATVQEHQKLLHASEEIAAELQMTMRNIALLDSRAQEANRRRDEASDELSLIQESISALWQERQQIRRQKMEALRWLERWKSRGQVGAAHCNGVIGFAEELPELAEFSLSDLQNATCNFSNSFKIGQGGYGCIYKGEMLGRTVAIKKFHQHNMQGPLEFHQEVQVLGSLQHPHLITLLGFCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMVAEIASALCFLHSCKPEAIVHGDLKPETVLLDSSLGCKMCGFGFCRLVSEESLLRPSFRLSTEPKGAFTYMDPEFQRTGILTTKSDIYSFGLIILQLLTGRNPIGLAILVRNAASCGKLSSILDSSAGEWPSAVAMRLVELGLQCCQQNRRDRPELTPTLVKELEQLHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHVTSPMTNLKLSHLFLTPNHALRLAIQDWLCKS
Length818
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.07
Grand average of hydropathy-0.228
Instability index50.40
Isoelectric point6.77
Molecular weight91847.65
Publications
PubMed=22057054

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06960
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.74|      28|     107|     215|     251|       1
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  215-  242 (49.52/22.75)	LRCRSFQYGKNELFNSEYLQPSSVRTTI
  626-  653 (50.22/36.94)	LLRPSFRLSTEPKGAFTYMDPEFQRTGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     180.67|      59|     373|     309|     371|       2
---------------------------------------------------------------------------
  309-  371 (83.41/70.21)	VTDEAFAG....LLKCKRLEVEAMEAIRKVNLfeSAHACEvKLRKEAEDVLRATVQEHQKLlHASEE
  683-  745 (97.27/65.16)	VRNAASCGklssILDSSAGEWPSAVAMRLVEL..GLQCCQ.QNRRDRPELTPTLVKELEQL.HASEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.75|      14|      15|      13|      26|       5
---------------------------------------------------------------------------
   13-   26 (26.36/14.26)	PILHLP.FHALPSSS
   30-   44 (21.39/10.35)	PLPMLPkVHVAAGKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.81|      76|     315|      91|     186|       7
---------------------------------------------------------------------------
   91-  186 (90.36/115.19)	EVVSAFRKvEREQI.......MKLLDKYLTICQAARVKACIIVTEADQVQKgIVDLVVKhNIQKLVIGAvpENCIKVkrnsGKANYTaknappfCevwfIYKG
  409-  491 (129.44/87.49)	ESISALWQ.ERQQIrrqkmeaLRWLERWKSRGQVGAAHCNGVIGFAEELPE.LAEFSLS.DLQNATCNF..SNSFKI....GQGGYG.......C....IYKG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06960 with Med32 domain of Kingdom Viridiplantae
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