<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06955

Description U-box domain-containing protein 34
SequenceMSTPPPRSVAVAVSGGVRGSRRAVQWAVENLVPQADRFILVHVIPPITSIATPTGEYIPVSEADADVLASCVQDVKLKSQQIFLPFTKLCDSNTMETVLLEDDNVAEALLSFISESRVQTLVLGSDSSNFITRKLKGPGIPTTILRCAPDGCDVYVVARDRIISKLADFSSSHSHETSQRYFMSTKVNKADNDAGIGREMSGISSSSTEPKILKNFKFLSISERSYIGLQTFSHRRDSFENSTKNEEENPENCGDDIEAISLHSFDSIASAQREQLVMQQEVERLQQELQNTIAMYKQVCEDLVQAQNQALLLSSESLEETKIVNASLKREETLRKIAAEEKTKYLKVMKELEEAKSKFAKESYERQMAELDVLRESIEKQRIVDTLLSNDRRYRKYTMDEIKIVTNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENRCLVYEYMENGSLEDYILNKNSKPPLPWFFRFRIAFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLAEVVPDNITEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIMTVEDAIRNGSFRDILDTSAGDWPLDETVELAKVALKCTALRCRDRPELDTEVLPLLKRFFDAANASARMGRNSASAPSQYYCPILQEIMDDPYIAADGFTYEYIAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF
Length763
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.07
Grand average of hydropathy-0.308
Instability index43.44
Isoelectric point5.68
Molecular weight85995.12
Publications
PubMed=22057054

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06955
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.69|      53|      55|      58|     112|       1
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   58-  112 (82.94/51.31)	IPVSEADADVLASCVQDV...KLKSQQIflPFTKL.CDSNTMETVLLEDDNVAEALLSF
  113-  169 (80.75/44.51)	ISESRVQTLVLGSDSSNFitrKLKGPGI..PTTILrCAPDGCDVYVVARDRIISKLADF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.06|      26|      57|     316|     341|       2
---------------------------------------------------------------------------
  316-  341 (39.91/24.89)	ESLEETKIVNASLKREETLRKIAAEE
  376-  401 (44.14/28.22)	ESIEKQRIVDTLLSNDRRYRKYTMDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.65|      23|      55|     184|     207|       4
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  184-  207 (35.12/26.41)	STKvNKADNDAGIGREMSGISSSS
  242-  264 (41.53/26.81)	STK.NEEENPENCGDDIEAISLHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.18|      15|     191|     211|     226|       8
---------------------------------------------------------------------------
  211-  226 (23.43/18.96)	KILKNFkF...LSISERSY
  403-  420 (23.76/14.03)	KIVTNF.FaedLIIGEGGY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06955 with Med32 domain of Kingdom Viridiplantae
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