<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06954

Description Uncharacterized protein
SequenceMDTLKRHLPVSGQEGLHELRKIAQRFEEKIFTAATTQADYLRKISLKMLTMESKSQGTMAPNIPPNQGLVIPPQVHNPGQQHPIPMPNQTQTRQQLLAQNIQNNIASQPSGLGQTTIQNVGQNNPNMQNIPGQNSVGSNMGQNSNMQNIIQHNQQSNNVQQSTQSVLQQHSQVIRQQQPQQTSIIHQQQTPITQQSVLPPQQQQQQQQQLMGAQANATNMQHSQILGTQNNVGDLQQSQRLLAQQNNLSNLQQQQLINQQNSLSNIHQQLGNNVPGLQPQQVLGPQSSNSGMQTSQHSAHVLQQSQQNASNLLTSQAQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNSLQRDMQQRLQASGSLLQQPSVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEVYQKIKSMKESYLPELNEMYQKIDAKLQQHDSLPQQPKPDQLEKLKVFKMMLERIIKFLQVSKSNVLPNFKEKLGSYEKQIINFINTNRPRKTMPGQLPPPHMHSMSQTQTQVQPHENQMNSQLQTTNMQGSVATMQQNNMASMQQNSLSGVSTAQQSKMNSMQSSTNLDSGQGNAVNSLQQVPVSSLQQNPVSAPQQTNVNSLSSQAGVNGIQPNLNPLQPGSRMRQGIGVKPGVFPQHLSSSQRSAYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHMPSLTKVATPLQSANSPFVVPTPSPPLVPSPMPGDSEKPISGVSSISNAANIGYQQTGGAAAPSQSLAIGTPGISASPLLAEFTVPDGAHGNALAPTSGKSTVTEQPIERLIKVVKLMSQKALSSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVVSSAGSMNDTIKHLPASEVSDLDSTATSRFKRPRIEANHSLLEEIREVNQRLIDTVVDISNEEVDPTAAAAAEGTEGTIVKCSFNAVALSPSLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVESSKENEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEHAQQSGGGSFSSKYGTWENCLTT
Length1091
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.03
Grand average of hydropathy-0.669
Instability index64.67
Isoelectric point9.24
Molecular weight118780.64
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06954
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     751.85|     116|     116|     138|     253|       3
---------------------------------------------------------------------------
   65-  153 (85.51/18.15)	.......................................................PNQGLVIPPQ..vHNP.GQQHPIPMPNQT...QTRQQ....LL.AQ.NIQNNIASQPSGlgqttiqnvgqnnpnmqnipGQNSVG........................SNMGQ.NSNMQNII....QHN
  154-  268 (186.76/48.58)	QQSN..............................NVQQSTQSVLQQHSQVIRQQQPQQTSIIHQQ...QTPITQQSVLPPQQQQ...QQQQQ....LMGAQANATNMQHSQILG....................TQNNVGDLQQS..QRLLAQQNNLSNLQ.QqQLINQ.QNSLSNI......HQ
  269-  347 (89.55/19.36)	QLGN..............................NVP...............GLQP........Q...Q.......VLGPQSSNsgmQTSQHsahvLQQSQQNASNLLTSQA..............................QQS..QPQAPQQQLMPQIQsQpAQLQQ.QLGLQ..........
  348-  443 (117.76/27.84)	QQPN..............................SLQRDMQQRLQASGSLL..QQP...................SVLDQQKQL...YQSQR....PL.PETSSTSLDSTAQTG.....................QSSGGDWQEEvyQKI.......KSMK.E.SYLPElNEMYQKIDaklqQHD
  447-  578 (143.19/35.48)	QQPKpdqleklkvfkmmleriikflqvsksnvlpNFKEKLGSYEKQIINFINTNRPRKT..MPGQ...LPPPHMHSMSQTQTQV...QPHEN....QMNSQLQTTNMQGSVATM....................QQNNMASMQQ..........NSLSGV.....STAQ.QSKM.NSM....QSS
  609-  703 (129.07/31.24)	QQTN..............................VNSLSSQAGVNGIQPNLNPLQP..GSRMRQGigvKPGVFPQHLSSSQRSA...YPHQQ....MKGSPFPVSSPQLLQATS....................PQIP....QHS..SPQVDQQNHMPSL.........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.04|      12|      16|     813|     828|       4
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  813-  825 (14.76/17.82)	VVKlMSQKALSSA
  832-  843 (20.29/ 7.04)	VVS.MNDRIAGSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.00|      16|      16|     769|     784|       5
---------------------------------------------------------------------------
  730-  745 (26.78/12.88)	PMPGDSEKPISGVSSI
  769-  784 (28.53/14.26)	GTPGISASPLLAEFTV
  787-  802 (24.69/11.23)	GAHGNALAPTSGKSTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.62|      62|     113|     910|     974|       6
---------------------------------------------------------------------------
  910-  974 (95.34/79.52)	EVSDLDSTATSRFK.RPRIEANHSLLEEIREVNQRLIDTVVdisNEEVDPTAAAAAEGTEGTIVKC
 1026- 1088 (104.28/78.23)	ENEDLSVKAKSRFSiSLRSLSQPMSLGEIARTWDVCARTVI...SEHAQQSGGGSFSSKYGTWENC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06954 with Med15 domain of Kingdom Viridiplantae
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