<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06944

Description Uncharacterized protein
SequenceMDPDSKKFGGGPRELTGSVDLLNHFKLLPHFEFFCKRPLPVSISDAHYLHNIVGDTEIRKGDGMQLDQLIQNSSLSSGTNYRIQPLDFDILKEAFQLKENAPIDLPAAEKGIPTVAGKSKGESKDEKKHKKHKDRDKDKDKEHRKHKHRQKDRSQDKEKDKKKDKSRHNDSSADPSKKHHEKVDNFSYDAFALLM
Length195
PositionHead
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.06
Grand average of hydropathy-1.232
Instability index31.34
Isoelectric point9.17
Molecular weight22363.91
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06944
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.68|      16|      16|     127|     142|       1
---------------------------------------------------------------------------
  127-  142 (29.14/13.19)	KKHK.KHKDRDKDKDKE
  144-  160 (24.99/10.33)	RKHKhRQKDRSQDKEKD
  162-  178 (23.55/ 9.34)	KKDKsRHNDSSADPSKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.10|      13|      15|      49|      61|       2
---------------------------------------------------------------------------
   49-   61 (21.20/17.19)	LHNIVGDTEIRKG
   66-   78 (19.90/15.71)	LDQLIQNSSLSSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06944 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PIDLPAAEKGIPTVAGKSKGESKDEKKHKKHKDRDKDKDKEHRKHKHRQKDRSQDKEKDKKKDKSRHNDSSADPSKKHHEKVDNFSY
102
188










Molecular Recognition Features






MoRF SequenceStartStop




1) KKHHEKVDNFSYDAFALLM
2) SKDEKKHKKHKDRDKDKDKEHRKHKHRQKDRSQDKEKDKKKDKSRHND
177
123
195
170