<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06940

Description Heat shock cognate 70 kDa protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRISDPSVQSDMKLWPFKVISGAAEKPMIVVNYKAEEKQFAAEEISSMVLTKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDITGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKDLCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKISSKLSSEDKTKIDNAIEQAIQWLDTNQLAEADEFEDKMKELENICNPIIAKMYQGGAGAGPEVDDDAPPAGGSGAGPKIEEVD
Length647
PositionUnknown
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.06
Grand average of hydropathy-0.417
Instability index34.82
Isoelectric point5.11
Molecular weight71029.61
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06940
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     394.80|      98|     189|     121|     218|       1
---------------------------------------------------------------------------
  121-  218 (153.92/109.07)	EEISSMVLTKMREIAEAYL......GSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA.AIAYGLDKKATSV.GEKNVLIFDLGGGTFDVSLLTI
  309-  407 (134.83/94.56)	EELNMDLFRKCMEPVEKCLrdakmdKSTVHDVVLVGGSTRIPKVQQLLQD..FFNGKDLCKSIN.PD.E.AVAYGAAVQAAILsGEGNEKVQDL..LLLDVTPLSL
  423-  502 (106.05/72.68)	...NTTIPTKKEQVFSTY........SDNQPGVL.IQVY..EGERTRTRDNNLLGKFELSGIPPAPRGVpQITVCFDIDAN...GILNVSAEDKTTG.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.00|      18|      21|      38|      55|       2
---------------------------------------------------------------------------
   16-   33 (19.07/ 9.47)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.65/21.00)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.28/13.90)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.71|      11|      14|     619|     629|       3
---------------------------------------------------------------------------
  619-  629 (22.00/12.42)	GGAGAGPEVDD
  635-  645 (21.72/12.18)	GGSGAGPKIEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06940 with Med37 domain of Kingdom Viridiplantae
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