<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06936

Description Uncharacterized protein
SequenceMEGEGELNQAVQQQLNLKQVKSRALSLFKAISRILEDFDVYARTNTTPKWQDILGQYSMVNLELFNIVDDMKKVSKAFIVHPKNVNAENATILPVMLSSKLLPEMETDDISKRDQLLQGMQNLPIATQIDKLKARIDMIAAACEGAEKVLADTRKAYCFGTRQGPAIAPTLDKGQAAKIQEQENLLRAAVNAGDALRIPGDQRQITTAPPMHLADALPVNEAAQSFPDGSSNNLFMKSTPMPSNNMGGQNSLLQTSGAQLLGRSAASPSAATSTTTFDNTTASPIPYANSPRSSTHMMNTPSPQQQTPQQQQQQPPVQQQQRQKLMQLPQQQQQQLLAQQQQYRQSAMQGLGQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTRLSQFSGPANSALFSAAQTTPNTQMIPNVSGTLTSQSFLSRVQFGLSGNNPQRSHASQMLSDQMFNMGGGNPGGMMSIQQQQQQQQQHGSQAFGSMASNAQNLQSGMVTLQNAQQNHPNFSQQRQQNPQ
Length526
PositionHead
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.04
Grand average of hydropathy-0.673
Instability index52.36
Isoelectric point9.28
Molecular weight57572.94
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06936
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.12|      16|      18|     433|     448|       2
---------------------------------------------------------------------------
  433-  448 (27.07/12.11)	QS....FLSRVQFGLSGNNP
  450-  469 (25.05/10.69)	RShasqMLSDQMFNMGGGNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.83|      15|      18|     331|     345|       3
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  331-  345 (25.83/ 8.60)	QQQQQLLAQQQ.QYRQ
  349-  364 (23.00/ 6.79)	QGLGQLHGQHQmQFSQ
  512-  526 (25.00/ 8.07)	QNHPNFSQQRQ.QNPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     187.77|      62|     135|      60|     123|       5
---------------------------------------------------------------------------
   60-  123 (97.13/64.91)	VNL.ELFNIVDDMKKVSKAFIVHPKN...VNaENATILPVMLSSKLL....PeMETDDISKRDQLLQ..GMQNL
  190-  261 (90.64/52.75)	VNAgDALRIPGDQRQITTAPPMHLADalpVN.EAAQSFPDGSSNNLFmkstP.MPSNNMGGQNSLLQtsGAQLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.16|      12|      18|     267|     284|       6
---------------------------------------------------------------------------
  267-  284 (13.13/20.90)	SPSaatSTTTFDNttaSP
  290-  301 (25.03/14.11)	SPR...SSTHMMN...TP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.86|      20|      23|     387|     408|       8
---------------------------------------------------------------------------
  387-  408 (30.53/21.96)	QSQLNQGNQMtrLSQFSGPANS
  413-  432 (34.32/18.47)	AAQTTPNTQM..IPNVSGTLTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06936 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRIPGDQRQITTAPPMHLADALPVNEAAQSFPDGSSNNLFMKSTPMPSNNMGGQNSLLQTSGAQLLGRSAASPSAATSTTTFDNTTASPIPYANSPRSSTHMMNTPSPQQQTPQQQQQQPPVQQQQRQKLMQLPQQQQQQLLAQQQQYRQSAMQGLGQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTRLSQFSGPANSALFSAAQTTPNTQMIPNVSGT
2) SRVQFGLSGNNPQRSHASQMLSDQMFNMGGGNPGGMMSIQQQQQQQQQHGSQAFGSMASNAQNLQSGMVTLQNAQQNHPNFSQQRQQNPQ
196
437
429
526










Molecular Recognition Features






MoRF SequenceStartStop




NANANA