<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06933

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMAEKQLIVAVESTAALGPYWDAILMDYLEKIIRCFGGNDSTGQKPSASNVEFALVTFNTHGCYSGWLVQRTGWTRDPDVFFLWLSSIPFNGGGFNDAAIAEGLSEALMMFPNSQSGGPNQQSVDMHKHCILVAASNPYPLQTPVYVPRQQNLEQTETIDSDPGSRLYDSEAVAKAFPQFSISLSVICPKQLPKIKAIYNAGKRNSRAADPPVEAKNPHFLILISEGFKEARSTLSRSGITSLPSNQSPVKVDSVSVTPVTGAPPTSMPSVNGSIANRQPVSAGNVAPATVKVEPVPVTSMVSGPAFPHNSSVPRATSTSQGVPSLQTSSPSSVSQDIISNNENAQDTKPTVSMLQPLRPVNPAQANVNILNNLSQARQVMNSAALSGGTSMGLPTMGQTPVAMHMSNMISNGMTSSVPAAQNVFSSGQSGITSITSSGPLTVPAQVGQNSGLGSLTSNTSNLSSSSNIGITQSLGNLQGPVSMGQQVSGMSQGNISGAQMVQGGVSMNQNVMSGLGPSVVSSGTGTMIPTPGMSQQGQSSMQPLVNNAAANMPLSQQTSGGMQSAQSKYLKVWEGSLSGQRQGQPVFITKLEGYRNSSASETLAANWPNVMQIVRLISQDHMNNKQYVGKADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAFRLIGMLFPGDMVVFKPQLSSQQQQQMQQHQQMQSQQQHLPQLQQQQQIPHMQQQQLPQLQQQQQQLPQLQQQQQLQQQQQQQQQQQQQLSQMQHQQQLPQMQQQQQLPQLQQQQLPQLQQQQQLPQLQQLQPQQQQMVGAGMSQAYVQGPARSQLVSQGQVSSQGATNIGGGGFMS
Length849
PositionUnknown
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.05
Grand average of hydropathy-0.401
Instability index67.24
Isoelectric point8.94
Molecular weight91194.79
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06933
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     203.83|      15|      15|     768|     782|       1
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  699-  714 (29.84/ 8.28)	MQQHQQMQsQQQHLPQ
  718-  731 (33.17/10.07)	QQQIPHMQ.QQQ.LPQ
  736-  750 (35.41/11.27)	QQQLPQLQ.QQQQLQQ
  751-  764 (30.92/ 8.86)	QQQ.QQQQ.QQQQLSQ
  768-  782 (37.77/12.53)	QQQLPQMQ.QQQQLPQ
  785-  799 (36.71/11.97)	QQQLPQLQ.QQQQLPQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.30|      16|      23|     478|     497|       2
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  478-  497 (22.94/18.93)	QGPvsMGQQVsgMSQGNISG
  821-  836 (24.36/ 7.55)	QGP..ARSQL..VSQGQVSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.51|      21|      22|     414|     435|       4
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  395-  432 (20.03/ 8.70)	TMGqtpvamhmsnmisngmTSSVPAAqNVFSSGQSGIT
  522-  542 (28.48/ 9.65)	SGT................GTMIPTP.GMSQQGQSSMQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     185.55|      35|     184|     356|     394|       5
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  210-  239 (29.19/14.25)	PPVEAKN......................PHF....LILISEgfkEAR.........STLSrS....G.I
  240-  274 (36.68/20.45)	TSL.PSN......................QSPVKVDSVSVTP...VTGA........PPTS.MpsvnGsI
  275-  322 (31.01/15.76)	ANRQPVSagnvapatvkvepvpvtsmvsgPAFPH.....NSS...VPR......ATS..TS.Q....G.V
  323-  353 (44.29/26.74)	PSLQTSS......................PSSVSQDIISNNE...NAQDT......KPTVS.M.......
  356-  393 (44.38/37.50)	.PLRPVN......................PAQANVNILNNLS...QARQVmnsaALSGGTS.M....G.L
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.64|      21|      23|     433|     455|       6
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  433-  455 (30.55/22.02)	SITSSgpLTVPAQVGQNSGLGSL
  457-  477 (35.09/18.17)	SNTSN..LSSSSNIGITQSLGNL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.64|      10|      23|      90|      99|       8
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   90-   99 (18.13/ 9.35)	NGGGFNDAAI
  114-  123 (18.51/ 9.75)	QSGGPNQQSV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.09|      34|      38|     132|     168|      10
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  132-  168 (52.62/32.95)	VAASNP.YPLQTPVYVPRQqnLEQTETIdSDPG...SRLYD
  172-  209 (49.47/22.52)	VAKAFPqFSISLSVICPKQ..LPKIKAI.YNAGkrnSRAAD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06933 with Med25 domain of Kingdom Viridiplantae
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