<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06932

Description Pre-mRNA-processing factor 40 isogeny A (Fragment)
SequenceVGKNNVIPTEEKTNEDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKKAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLEEHVAAGNLTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEELEKQYHEDKTLIKDTIKSGKIIVVTTSIFEDFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNMLYTIKDITTSSKWEDCKPLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKDRHRKDETDSDNQDITDSHGYKEEKKKEKDKERKHRKRHQSSMEDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNESRHRRHKREHWDGSRKIGGLEELEDGELGDDAEN
Length583
PositionUnknown
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.07
Grand average of hydropathy-1.516
Instability index48.31
Isoelectric point6.19
Molecular weight70272.50
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06932
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     348.00|      67|      67|     421|     487|       1
---------------------------------------------------------------------------
   80-  148 (77.61/21.21)	.....KKLEAEERRMKQKKAREEFTKMLEECKELTSSMRWS......KaismfENDERFNAVERPRDREDLFESYmvELE
  353-  423 (82.56/22.99)	ERAKEKE.E.KEAKKRQ.RLADDFTNMLYTIKDITTSSKWEdckplfE.....ETQE.YRSIGDESYSREIFEEYitYLK
  424-  491 (96.22/27.90)	EKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREK......E.....KSKDRHRKDETDSDNQDITDSH.gYKE
  492-  555 (91.61/26.25)	EKKKEKDKERKHRKRHQSSMEDVDSEKEEKEESKKSRRHGS......E.....RKKSRKHANSPESDNESRHRRH.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.20|      27|      78|     207|     233|       2
---------------------------------------------------------------------------
  174-  193 (27.65/12.85)	..DYV....KVNSHWRKIQ.DRLEDDD
  207-  233 (45.53/26.45)	FQDYIRDLEKEEEEQKRIQKDRIRRGE
  288-  314 (40.02/22.26)	FEDVAEELEKQYHEDKTLIKDTIKSGK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06932 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKEKSKDRHRKDETDSDNQDITDSHGYKEEKKKEKDKERKHRKRHQSSMEDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNESRHRRHKREHWDGSRKIGGLEELEDGELGDDAEN
429
583










Molecular Recognition Features






MoRF SequenceStartStop




1) ERKKSRKHANSPESDNESRHRRHKREHWDGSRKIGGLEELEDGELGDDAEN
2) QDITDSHGYKEE
3) RKHRKRHQSSMEDVDSEKEEKEESKKSRRHG
533
481
501
583
492
531