<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06929

Description Uncharacterized protein
SequenceMRMKSRSLDEWRSYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDGIAERLFSSRLTRCLGCDRVELAVAVSGDGKEKADDDGHDDGLDDRGCKIVGFEREEEAGASKESKVNGGGDLDVNPVSNYSFGEAEALTDEIEEESQYIGEILRIRDILHNREEESESVLLDSLRRLKLIELTVDCLKATEIGKAVNPLRKHGSKYIRQLAKTLIDGWKEMVDEWVKATATTAIPGSEGTPDSVNPSVVDDDDEEEGLPSPPLDEGAFFVTQTGSMELSQFFDGMDDDGNPRPTEQFNKNRENGRRPALNGQLIEKRKLQASHETDISTRDREVKSQQPKKNEAAVWLNKPVTADSGPGRPPKSNMQRKSNMEPKMQQKVENNSNTRRPPTGQLDKSMRSDDAAVQVKLEATKRKLQESYQQVENAKKQRTIQVMEINDIPKQVVRRNPHFKPGYHNRQWANARR
Length462
PositionUnknown
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.05
Grand average of hydropathy-0.923
Instability index48.23
Isoelectric point5.45
Molecular weight52063.42
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06929
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.39|      35|      56|     301|     352|       1
---------------------------------------------------------------------------
  301-  337 (52.52/34.34)	GRRPALNGQL...IEKrKLQASHETDISTRdREVKSQQPK
  356-  393 (59.87/53.74)	GRPPKSNMQRksnMEP.KMQQKVENNSNTR.RPPTGQLDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.89|      44|     163|      81|     129|       2
---------------------------------------------------------------------------
   81-  129 (73.90/46.70)	DDDGHDDGLD....DRGCKIVgfereEEAGASKESKVNGGGDLDVNPVSNYSF
  247-  294 (76.99/39.26)	DDDDEEEGLPspplDEGAFFV.....TQTGSMELSQFFDGMDDDGNPRPTEQF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06929 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SQFFDGMDDDGNPRPTEQFNKNRENGRRPALNGQLIEKRKLQASHETDISTRDREVKSQQPKKNEAAVWLNKPVTADSGPGRPPKSNMQRKSNMEPKMQQKVENNSNTRRPPTGQLDKSMRSDDAAVQVKLEATKRKLQESYQQVENAKKQRTIQVMEINDIPKQVVRRNPHFKPGYHNRQWANARR
2) TATTAIPGSEGTPDSVNPSVVDDDDEEEGLPSPPLDEGAFFV
276
226
462
267










Molecular Recognition Features






MoRF SequenceStartStop




1) KPGYHNRQWANAR
449
461