<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06920

Description Uncharacterized protein
SequenceMPICEAFGSCIPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFSLPPIEHVMGGAATPALGSQLGPEYLLLVRNCMLASFGKSPKDRVRSRRFSKLISFSTEPLFMDSFPKLNIWYRQHRECIESTCSTLAPGPGGSVSQIVEALLSMMCRKINRSAQTLTPTTSGSSNSSTSSLDDALMKLKVPAWDILEATPFVLDAALTACAHGRLSPRELATGLKDLADFLPATLGTIVSYLSAEVTRGVWKPAFMNGTDWPSPAANLSTVEQQIKKILAATGVDVPSLAIDGNGPATLPLPLAAFLSLTITYKLDKSYERFVVLVGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLKSCFTSTLGLGSACIYNNGGVGTLLGHGFGSHVSGGISPVAPGIFYLRVFRSIRDVMFLTEEIVSLLMLSVRDIANGGLPKGEVDKLKKTKYGMRYGQVSLSASMTRVKHAALLGASFLWISGGYGLVQSLFTETLPSWFLSAQGLEQEVGESGVVVAMLRGYALASFAVLSGTFAWGIDTSSPASKRRPKVLEIHLEFLANALDGKVSLRCDCATWRAYVSGVMSLMVSCTPLWIQELDVGMLKRISNGLRQLNEEDLALRLLEIKGTSVMGEVAEMISQSRF
Length658
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.09
Grand average of hydropathy0.260
Instability index41.79
Isoelectric point8.86
Molecular weight71105.97
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06920
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     148.05|      42|      75|     215|     256|       1
---------------------------------------------------------------------------
  215-  248 (50.34/29.29)	.................ATGLKDLADFLPATLGT...IV..SYLSAE.VTRGVWKPA
  249-  276 (19.92/ 7.21)	FMNGTDWP...spaanlSTVEQQIKKILAAT..........................
  277-  326 (43.37/24.23)	...GVDVPslaidgngpATLPLPLAAFLSLTITY...KLdkSYERFV.VLVGPSLIA
  327-  353 (34.42/17.73)	LSSGCPWP..........................cmpIV..GALWAQkVKR..WSDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.88|      16|      27|     122|     137|       5
---------------------------------------------------------------------------
  122-  137 (31.93/17.73)	C..IESTCSTLAPGPGGS
  150-  167 (24.95/12.35)	CrkINRSAQTLTPTTSGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06920 with Med33 domain of Kingdom Viridiplantae
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