<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06918

Description Uncharacterized protein
SequenceMDSSNWRTNQGTNPTMDTSDWRAQLPPEARQRIVNKIMDTLKKHLPVSGPDGLHELRKIAQRFEDKIFTAAISQPDYLRKISLKMLTMENKSQNTLGSNMPPNQVGPSNKPPDQGLVLQPQVQNHGQQHSIPLPNQLQPHQQLLSQNIQTNVASQPNLAPVSSLSLTPSQNIVQNSNIQNIPGPNSVGSTISQNSNLQNILPQNQQSTNVQQSTQSMQQQHSQVIRHQQQTPVTQQQQQLMGPQSNTTNMQHAQMLGQQNNVGDIQQSQRMLSQQNNLANMQQRQQQLINQQNNPSNIHQQLGNNGPGLQQQHLLGHDSGNTEMQTSHHSAHMLQQSKPAQLQQHLGLQQQPNPSQRDMQQRIQASGSLLQQQNVLDQQKQLYQSQRTLPETSATSLDSTTQTAQPSGVDWQEEVYQKLQTMKESYLPEMNEMYQKIANKLQKHDSLPQQPKSEQIEKLRAYKMMLERMMEILQIPKNNILPNFKEKLGSYEKQIINLINSNRPRKGMSSVQLGQLPPTHMSSIQQPQSQVTQVQSHENQMNSQMQSTNLQGSVPTMQQNNIASLQHNSLSSVSTGQQNMMNSMQPGTNLDSGQVNSVNSLQQVPMSSLQQNPATTAQQTNNNSLSSQGMVVKPGVFQQHLASGQHSTYSHQQLKQGSAFPVSSPQLLQAASPQVQQHSSPQFDQQNHLPSKTKVGTPLQSSNSPFVGPTPSPPLAPFPMPGESEKSIPCVSSISNAANIGHQQTGGAVAPGQSLAIGTPGISASPLLAEVKSISSKTLSAAVRDIGSVVVMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFITQDGSNGIKRMKRYISAIPLNAVSSAGSMHDSIKHITASETSDLESTATSSVKKPKIEVNHALLEEIREINHQLIDTVVDISDEDVFDPTAAVAAAEGAEGIIVKCSFIAVALSPSLKSQYASAQMSPIQPLRLLVPANYPNCSPILLDKFPVESSKESEDLSVKAKSRFSSSLRSLSQPMSLGEIARTWDVCARNAISEHAQKSGGGSFSSKYGTWENCLTSN
Length1051
PositionTail
OrganismCajanus cajan (Pigeon pea) (Cajanus indicus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Cajanus.
Aromaticity0.03
Grand average of hydropathy-0.684
Instability index60.65
Isoelectric point8.83
Molecular weight114988.38
Publications
PubMed=22057054

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06918
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.61|      26|      28|     561|     588|       1
---------------------------------------------------------------------------
  142-  157 (27.66/ 6.23)	QLLS.....QNI....Q..TNVAS.QPN
  547-  568 (28.00/ 6.20)	.....STNLQGSVPTMQQ.NNIASLQHN
  569-  596 (35.94/17.23)	SLSSvSTGQQNMMNSMQPgTNLDSGQVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     156.04|      30|      30|     235|     264|       2
---------------------------------------------------------------------------
  238-  268 (50.46/14.47)	QQLMG....PQSNTTNMQH.AQMLG...QQNNVG..DiQQS
  286-  311 (38.59/ 9.43)	QQLIN....QQNNPSNI.H.QQ.LG.....NNGP..G.LQQ
  343-  380 (32.63/ 6.90)	QQHLGlqqqPNPSQRDMQQrIQASGsllQQQNVL..D.QQK
  656-  686 (34.37/ 7.64)	QGSAF....PVSSPQLLQA.ASPQV...QQHSSPqfD.QQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.57|      14|      16|     172|     185|       3
---------------------------------------------------------------------------
  172-  185 (28.77/13.06)	IVQNSNIQNIPGPN
  191-  204 (24.80/10.17)	ISQNSNLQNILPQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     189.64|      44|     113|     601|     644|       4
---------------------------------------------------------------------------
   96-  129 (31.94/10.17)	.................................................LGSNMPPNqVGPSNKPP..DQGLVLQPQVqnhGQQH....
  601-  644 (77.35/36.21)	LQQ.........................................VPMSSLQQNPATT.AQQTNNNSLSSQGMVVKPGV...FQQHLASG
  651-  727 (38.56/13.96)	HQQlkqgsafpvsspqllqaaspqvqqhsspqfdqqnhlpsktkVG.TPLQSSNSPF.VGPTPSPPLAPFPM...PGE...SEKS....
  730-  758 (41.79/15.82)	.............................................CVSSISNAANIG.HQQT........GGAVAPG......QSLAIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.65|      20|      21|     413|     432|       5
---------------------------------------------------------------------------
  413-  432 (35.42/20.96)	EEVYQKLQTMKESYLPEMNE
  453-  469 (21.96/10.15)	SEQIEKLRAYK.MMLERM..
  471-  486 (22.27/10.40)	.EI...LQIPKNNILPNFKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.60|      13|     114|     208|     220|       6
---------------------------------------------------------------------------
  208-  220 (23.30/ 9.95)	TNVQQSTQSMQQQ
  225-  237 (24.31/10.73)	IRHQQQTPVTQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.42|      22|      26|     998|    1020|      11
---------------------------------------------------------------------------
  998- 1020 (35.02/25.03)	SSSLRSlSQPMSLGEIARTWDVC
 1026- 1047 (41.40/25.39)	SEHAQK.SGGGSFSSKYGTWENC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.96|      10|      27|      47|      56|      15
---------------------------------------------------------------------------
   47-   56 (18.56/12.14)	VSGPDGLHEL
   72-   81 (18.39/11.95)	ISQPDYLRKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06918 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KGMSSVQLGQLPPTHMSSIQQPQSQVTQVQSHENQMNSQMQSTNLQGSVPTMQQNNIASLQHNSLSSVSTGQQNMMNSMQPGTNLDSGQVNSVNSLQQVPMSSLQQNPATTAQQTNNNSLSSQGMVVKPGVFQQHLASGQHSTYSHQQLKQGSAFPVSSPQLLQAASPQVQQHSSPQFDQQNHLPSKTKVGTPLQSSNSPFVGPTPSPPLAPFPMPGESEKSIPCVSSISN
2) LPEMNEMYQKIANKLQKHDSLPQQPKSEQIEKLR
3) MDSSNWRTNQGTNPTMDTSDWRAQLPPEARQRIVNKIMDTLKKHLPVSGPDGLHEL
4) MENKSQNTLGSNMPPNQVGPSNKPPDQGLVLQPQVQNHGQQHSIPLPNQLQPHQQLLSQNIQTNVASQPNLAPVSSLSLTPSQNIVQNSNIQNIPGPNSVGSTISQNSNLQNILPQNQQSTNVQQSTQSMQQQHSQVIRHQQQTPVTQQQQQLMGPQSNTTNMQHAQMLGQQNNVGDIQQSQRMLSQQNNLANMQQRQQQLINQQNNPSNIHQQLGNNGPGLQQQHLLGHDSGNTEMQTSHHSAHMLQQSKPAQLQQHLGLQQQPNPSQRDMQQRIQASGSLLQ
5) NVLDQQKQLYQSQRTLPETSATSLDSTTQTAQPSGVDWQEE
506
427
1
88
374
736
460
56
371
414










Molecular Recognition Features






MoRF SequenceStartStop




NANANA