<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06906

Description Uncharacterized protein
SequenceMDGQMGPSSNSSSHTMSSKHNMSGGEFQGKREKSDKDKSKVSVSGGSVDSSKKTSDSKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGEGGGDSLRPQMASSKSYGSPLISGSTPKHERCSPSHSKSPAYTPQNIDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSSEKHKKHKKEKKKVKDKDRDRERDRDKDRDKKKSHSIKPESWSKSPISSDQSLSMTSSGILSADRPSRPSPDFLIGEEDDDLMDVALIGN
Length259
PositionMiddle
OrganismAlligator mississippiensis (American alligator)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Crocodylia> Alligatoridae> Alligatorinae> Alligator.
Aromaticity0.03
Grand average of hydropathy-1.230
Instability index56.87
Isoelectric point9.22
Molecular weight27854.29
Publications
PubMed=22293439

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06906
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.52|      21|      29|      40|      61|       1
---------------------------------------------------------------------------
   40-   61 (26.38/10.62)	KVSVSgGSVDSSKKTSDSKNVG
  109-  129 (31.15/ 9.44)	SPLIS.GSTPKHERCSPSHSKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.10|      29|     146|       4|      38|       2
---------------------------------------------------------------------------
    4-   38 (46.95/29.41)	QMGPSSNSSSHTM....SSKHNmsggefQGKREKSD.KDK
  153-  186 (42.16/16.46)	QNSPSSDDGIRPLpeysSEKHK......KHKKEKKKvKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.08|      15|      15|      66|      80|       4
---------------------------------------------------------------------------
   66-   80 (25.21/11.74)	AKIIISKH.DGGSPSI
   82-   97 (19.88/ 7.70)	AKVTLQKPgEGGGDSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06906 with Med1 domain of Kingdom Metazoa
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