<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06898
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDLAYICEWEKRPKSNHCPSIPLVCAWSCRNLIAFTTDLKNEEEKDLTHMVHIIDTEHPWDVYSINSGHVEIITCLEWDQSGSRLLSADADGHIKCWSMTDHLANSWENTVGSMVEGDPVVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADIAFTGGGNIVVATSDGSSTSPVQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQNTSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQTMAVFYGSSSQRPVDEQTIKRQRTAGPLVHFKAMQLSWTSLALVGIDNHGKLSMLRIIPSMGHALDMNMSLRHLLFLLEYCMVTGYDWWDILLHVQPSMVQNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSSTVARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDIDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGAALGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCRDENHPTEPDDTLIDECCLLPSQLLIPNIDWLPINDGIISKLQNKQLVRLQFGKAPGLIGYTVSSQFDAFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTMLKSPNKTTAVKQWEQRWIKNCLCGGLWRRMPLSYF |
Length | 830 |
Position | Tail |
Organism | Alligator mississippiensis (American alligator) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Archelosauria> Archosauria> Crocodylia> Alligatoridae> Alligatorinae>
Alligator.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.003 |
Instability index | 45.22 |
Isoelectric point | 8.01 |
Molecular weight | 92962.18 |
Publications | PubMed=22293439
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP06898
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 384.67| 120| 133| 465| 587| 1
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465- 587 (199.83/125.03) FLLEYCMVTGYD...WW..DILLHVQPSMV.QNLVEKLHEEYMRQNAALQQVLSTRIVAMKASLCKLSSSTV.ARVCDYHAKL.FLIAISCTLKSLLRPHflNTPDKsPGDRLTEIC....SKITDIDIDKVMIN
593- 724 (184.84/106.71) FVLEMTTLQSLQqliQWvgDFVLYLLASLPnQGSPVRPGHSFLRDGAALGMLRELMVVIRIWGLLKPSCLPVyTATSDTQDSMsLLFRLLTKLWLCCRDE..NHPTE.PDDTLIDECcllpSQLLIPNIDWLPIN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 152.39| 48| 200| 76| 125| 2
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76- 125 (82.56/61.26) LEWDQSGSRLLSADADGH..IKCWSM.TDHL.ANSWENTVGSMVeGD..PVVaLSW
275- 328 (69.83/43.37) LARDMSEQVLLCASNQNTsiVECWSLrKEGLpVNNIFQQISPVV.GDkqPMI.LKW
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