<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06876

Description Uncharacterized protein
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAAATTATAGTTTTAISQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDIEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTCNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length525
PositionTail
OrganismAlligator mississippiensis (American alligator)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Crocodylia> Alligatoridae> Alligatorinae> Alligator.
Aromaticity0.07
Grand average of hydropathy-0.287
Instability index37.09
Isoelectric point5.40
Molecular weight56815.69
Publications
PubMed=22293439

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06876
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     370.46|      40|      40|     333|     372|       1
---------------------------------------------------------------------------
  176-  209 (38.22/19.33)	.LRGHESE...........VFICAWNPVS.dlL.ASGS.GDSTARIWNL.......
  235-  271 (44.28/23.57)	S....NKD...........VTSLDWNSDG.tlL.ATGS.YDGFARI.WTEDGNLAS
  272-  302 (39.75/20.41)	TLGQHKGP...........IFALKWNKKG..nY............ILSAGVDKTTI
  303-  354 (50.70/28.07)	IWDAHTGEakqqfpfhsapALDVDWQNNT..tF.ASCS.TDMCIHVCRLGCDRPVK
  355-  396 (63.40/36.96)	TFQGHTNE...........VNAIKWDPSG.mlL.ASCS.DDMTLKIWSMKQDTCVH
  397-  436 (55.09/31.15)	DLQAHSKE...........IYTIKWSPTG...P.GTCN.PNSNIMLASASFDSTVR
  448-  489 (55.83/31.66)	TLTKHQEP...........VYSVAFSPDG..kYlASGS.FDKCVHIWNTQSGTLVH
  490-  520 (23.19/ 8.81)	SYRG.TGG...........IFEVCWNARGdkvG.ASASdGSVCV............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06876 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATAGTTTTAISQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDIEIPPNKA
121
173










Molecular Recognition Features






MoRF SequenceStartStop




NANANA