Description | Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDLLYTVNRRSSSKFFSNQECLYNGQSLCSLSSRNIVAFTTMTELDDSSGKTRGCHVYVADLNMPWHAHKVLSNKHNITALEWDLPGDKLVMADTAGNVQLWMFKDHILNDWVLIGSAYFPGEHILGAAWFHNGKKTGLVTEKRDSIHYSEKFNHLLFAPSVRQFGGRAAEGVLVVSTTGMVGAIMITKDLQNPICYSTESLGNTRHRITAVDLCYGKNGHFLVAVSSGSICLPIRCFRVLVRKNDDKCTITSQALPSFFLQDGAPKDNSCTVVTHLKFVVREDADSLVIAANSENGGFVEVWELREKSQPVHKLFQPKTLEPFKTVVWQYQSQYRCQSPVTAIATTKLSIVTTLPPPSYVIIALADSSVHCLNRLDCLKEVAFSSLNTSWRPDEPSNKYFKNSVSIAHMDLSWLGCVLLACDTQGNMYLYKLLPDGTSMSLSYACTLLEYCLVTGLDWLDILLCLRSSMIEALCERLDVSFNRQLQSTQQYHYILFLSIKTSLYRMLVTGQSKAADLSSLLMIHSVATAFKSLLRPSDLISHDKGPAESLAAVITDIITDVDKVLLHLDPKEFTVEPSTLQSLQQLIQWVADLALNLLARLPEQRMQVKTGGYELLKDHKALNTVRELLVIIRIWGLLRPSCLPVFLRSADNLDVLALLFCLLSKLVQPNGDTQQQVDDGLIGHSKRNTTHVQKEKVKSIESIMTTKLAIKHKDSFVLKENRLHEKNYTIQQSRLKRYEHLSLPCSTLSVFVVYWFVLCPLIWAICYKFAYWPSYWSFLFWAVVFLIWIVIMCGLIIFWRRFQVEQSLEINAISKYGSDKERRPMNVHQISFEGEEFLGIKKWNDSHESESKIDRENLRRDLPPLVIHKQISGENIEDTDGMVCVEENKKTRLSIASDYAQKSPLQDYLKLVTVSPSEDGEVKSPKTPMSPRDLFFIDLIREAEKVERSLKTRTHFFPSETTKSDSAETVKSITNETDMENVEHRKDVKDTKDENLKDKKDNKLRLKRESNECCLLPNQIMIPQLHQGNSITAIVSPILFYQNLPLQLEYGVEPEQLVFTPEMNFVEGCMHSGQIVDTIRHLYLGRQPLLVKQCTRCGGKAQVQNMTRTAAIRAWDQRWTRACRCGGIWRIHKASQ |
Length | 1137 |
Position | Tail |
Organism | Trachymyrmex septentrionalis |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Trachymyrmex. |
Aromaticity | 0.09 |
Grand average of hydropathy | -0.169 |
Instability index | 47.44 |
Isoelectric point | 8.14 |
Molecular weight | 129264.63 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149 |
GO - Cellular Component | integral component of membrane GO:0016021 IEA:UniProtKB-KW mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | |
GO - Biological Process |
Binary Interactions |
Repeats | >MDP06860 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 79.84| 24| 27| 398| 422| 1 --------------------------------------------------------------------------- 398- 422 (42.31/37.71) NKY.FKNSVSIAHMDLSWlGCVLLA.C 427- 452 (37.53/27.34) NMYlYKLLPDGTSMSLSY.ACTLLEyC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 85.66| 25| 27| 1074| 1100| 2 --------------------------------------------------------------------------- 1075- 1100 (41.58/32.84) QIVDTIRHLYL.GRQPLLVKQCtRCGG 1103- 1128 (44.08/24.62) QVQNMTRTAAIrAWDQRWTRAC.RCGG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 240.86| 77| 196| 24| 107| 3 --------------------------------------------------------------------------- 24- 107 (128.29/101.75) NGQSLCSLSSRNIV....AFTTMTELDDSSgktrgChvYVADLNMPWHAHKVLSNKHN....ITALEWDL..PGDKLVMA...DTAGNVQLWMFKDH 219- 308 (112.57/72.98) NGHFLVAVSSGSIClpirCFRVLVRKNDDK.....C..TITSQALPSFFLQDGAPKDNsctvVTHLKFVVreDADSLVIAansENGGFVEVWELREK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 75.57| 26| 99| 486| 511| 5 --------------------------------------------------------------------------- 486- 511 (47.56/28.01) LQSTQQ.YHYI..LFLSIKTSL..YRMLV.TG 581- 612 (28.01/13.87) LQSLQQlIQWVadLALNLLARLpeQRMQVkTG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 47.36| 12| 15| 762| 773| 6 --------------------------------------------------------------------------- 762- 773 (26.74/15.21) LIWAI..CYKFAYW 787- 800 (20.62/10.14) LIWIVimCGLIIFW --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 120.47| 40| 270| 696| 738| 7 --------------------------------------------------------------------------- 696- 738 (57.98/50.89) EKVKSIESiMTTKLAIKH.KDSFVLKENRLHEKNYtiQQSRLKR 969- 1009 (62.49/43.10) ETVKSITN.ETDMENVEHrKDVKDTKDENLKDKKD..NKLRLKR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 72.44| 22| 26| 801| 822| 8 --------------------------------------------------------------------------- 801- 822 (36.58/30.15) RRFQVEQ....SLEINAISKYGSDKE 824- 849 (35.86/29.38) RPMNVHQisfeGEEFLGIKKWNDSHE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 56.68| 16| 194| 457| 472| 9 --------------------------------------------------------------------------- 457- 472 (29.86/21.43) LDWLDILLCLRSSMIE 654- 669 (26.83/18.35) LDVLALLFCLLSKLVQ --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FFIDLIR 2) IWRIHK | 936 1129 | 942 1134 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab