<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06830

Description Sex-lethal like protein
SequenceMVVSLDGTSWSIQQQPQHQLLVVDSVAQQQQQQIVALNQIVASNQISSSGGDPQQQCRKMTDQREQQQQQQQQQQQQPQPQFQQQQQQQQQQQQQQQIKGNEEPKTNLIINYLPQNMNEKELYSLFVTIGPVESCRVMKDYKAGYVLSIGNFVRMIFLIKLIIRFTFQTGYSYGFGFVNYAKAEDAATAINTLNGLQVQNKRLKVSFARPSGEEIKETNLYVTNLPRNITESQIDEIFSKYGNIVQKNILRDKLTGLPRGVAFVRFDKREEAQEAITQLHGTIPEGGSEPLSVKIAEEHGKQKAAYYAGWQAGYNQSRGK
Length320
PositionTail
OrganismCyphomyrmex costatus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Cyphomyrmex.
Aromaticity0.08
Grand average of hydropathy-0.704
Instability index55.47
Isoelectric point8.87
Molecular weight36431.53
Publications









Function






Annotated function


GO - Cellular Component
ribonucleoprotein complex	GO:1990904	IEA:InterPro

GO - Biological Function
RNA binding	GO:0003723	IEA:UniProtKB-UniRule

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06830
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.42|      14|      29|     223|     236|       2
---------------------------------------------------------------------------
  223-  236 (24.41/18.48)	TNLPRNITESQIDE
  255-  268 (25.01/19.10)	TGLPRGVAFVRFDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.32|      12|      27|     141|     153|       3
---------------------------------------------------------------------------
  141-  153 (17.77/13.01)	YKAGYVLSIGnFV
  167-  178 (24.54/13.35)	FQTGYSYGFG.FV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.98|      31|      85|     184|     214|       5
---------------------------------------------------------------------------
  184-  214 (50.75/31.93)	EDAATAINTLNGL..QVQNKRLKVSFARPSGEE
  270-  302 (47.23/29.27)	EEAQEAITQLHGTipEGGSEPLSVKIAEEHGKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06830 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QISSSGGDPQQQCRKMTDQREQQQQQQQQQQQQPQPQFQQQQQQQQQQQQQQQIKG
45
100










Molecular Recognition Features






MoRF SequenceStartStop




1) AYYAGWQAGYNQSRG
2) QPQPQF
305
77
319
82