<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06791

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSDDGERSPKRQRLDSYSPASPPPVPEIKPFVQPPQTPPPSVHMSPSWQSQTSAADHRSTSGPGSVTSPTPSSTPGLAGGQRVSGGEEGAESTSHTPGMESEGRKSGDGDAQMADMEAEPARAEGMIDDVEHRRSDHERGERESADAVQDLPPAPRLYKLHTEPIPPSQPHPTQNLIDLYSLHRLQASVARRDAQGNKINKLRKSYEGKVKALGLEGQSKAVPGNGALEGLLDAGWDEIVADGQSLWEQQKYSNYDPLTEQSIEGLIGRVGDALSGMSKGRFPSKDERKHWEDVLGLSQPKPASSMTAQAGVTNPLLAKTAPGQAVRASAPASPRAGLARPERTGKKRRYDDSSFSGYADTFVDDDGGYSTGGDSGNRHGSTTKRQKTASADLGRPVGKKVSA
Length403
PositionHead
OrganismAcidomyces richmondensis BFW
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Teratosphaeriaceae> Acidomyces> unclassified Acidomyces.
Aromaticity0.04
Grand average of hydropathy-0.933
Instability index61.36
Isoelectric point6.24
Molecular weight42895.61
Publications
PubMed=26973616

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06791
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.54|      16|      20|     142|     161|       1
---------------------------------------------------------------------------
  146-  161 (29.99/19.84)	DAVQDLPPAPR.....LYKLH
  163-  183 (26.55/ 8.22)	EPIPPSQPHPTqnlidLYSLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.01|      14|      20|      72|      85|       2
---------------------------------------------------------------------------
   72-   85 (24.22/11.47)	SSTPGLAGGQRVSG
   94-  107 (24.80/11.91)	SHTPGMESEGRKSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.82|      15|      15|      19|      33|       3
---------------------------------------------------------------------------
   19-   33 (30.08/13.99)	PASPPPVPEIKPFVQ
   35-   49 (32.75/15.84)	PQTPPPSVHMSPSWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.82|      10|      19|     272|     283|       4
---------------------------------------------------------------------------
  272-  283 (10.65/14.73)	DALsGMSKGRfP
  293-  302 (19.18/10.67)	DVL.GLSQPK.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06791 with Med19 domain of Kingdom Fungi
Unable to open file!