<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06778

Description Uncharacterized protein
SequenceMNTGVGSPGGDGQPPQASPTLGQLKEALRVLENTQNLFTSMKNQVVYACGEGHLLAADEGRQYLARIVRTLDDEHRAIRAGWPRLTAALEVARVVNKVAAARGTAAGGSGAVTAHARVGGAAGAAGPAAGPAAALQSHCRSVLASLDAAVCEGLLGAGPHGPGERRAKRQRMDDDADVGGTASAVAAAAAAAAAGNTPSPPHPSTSSPSPPRPLAPPGRTRLAAAAGGSGGTLELVSVLLRLRALDGGGRGGGGGGASSSTLGGMRLHALDDGGNALALPSALTAALAAAATATSAAVAGGGSGPSVPAVDGALLAAGAARLAGATQVRMLIPGVFVANVLLAEPGSPAPLRVAVDSADRAFEMDPWATPASQPAQPAAAPLAAEPRSPGGAALEELLLWLLTCRDLFSKRCAATGRLLAWDPSVQYPVPPIFRAFKLPRAELRLRAVELPRVAAYHMHVAPLEELGWEEDVQAQAAAGWGVPPPSSAPAATGNGDGAAAVAAVPRPAAQGPV
Length513
PositionTail
OrganismGonium pectorale (Green alga)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Chlamydomonadales> Volvocaceae> Gonium.
Aromaticity0.03
Grand average of hydropathy0.061
Instability index44.34
Isoelectric point8.33
Molecular weight50779.92
Publications
PubMed=27102219

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06778
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.09|      24|      30|     103|     131|       1
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  108-  131 (44.54/ 9.95)	GSG...AVTAHARVGGAAGAAGPAAGP
  479-  505 (32.55/10.56)	GWGvppPSSAPAATGNGDGAAAVAAVP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     274.43|      69|      71|     214|     283|       2
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  157-  211 (51.48/10.82)	AGPHGPGERRAKRqrMDDdadvGGTAS.....AVAAA.....AAAAAagnTPSPPHPSTSSPSP..P......................
  214-  256 (50.02/12.78)	.........................................LAPPGR...TRLAAAAGGSGGTL..ELVSVLLRLRALdGGGRGGGGGG
  257-  327 (96.95/26.78)	ASSSTLGGMRLHA..LDD....GGNAL.....ALPSALtaaLAAAAT..aTSAAVAGGGSGPSV..PAVDGAL.LAA..GAARLAGATQ
  343-  407 (75.97/19.35)	AEPGSPAPLRV.A..VDS....ADRAFemdpwATPASQ...PAQPAA...APLAAEPRSPGGAAleELLLWLLTCRDL...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.11|      41|     362|      49|      92|       3
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   52-   92 (72.51/40.80)	GHLLAADEGRQY.LARIVRT..LDDEHRAIRA.GWPRLTA.ALEVA
  416-  461 (57.59/24.57)	GRLLAWDPSVQYpVPPIFRAfkLPRAELRLRAvELPRVAAyHMHVA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06778 with Med27 domain of Kingdom Viridiplantae
Unable to open file!