<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06776

Description Uncharacterized protein
SequenceMYGLTHPVKLEADVLASQTFSHAGLVSAPPIGACDDDVPPPVPDELLPPSEELLRGQLAAVRLPVGNAAPTQSAWCAVSNLIAVALSPEPGSSVAQILVLEPSHPEDCTALELPMAGPGDHVSSLEWSWPGQRRALLSATASGRVVVWTQPSQQGQDESVFPRCIDDWHGQLLLDAGDSAASGSGGAGSKTGGPQVKVEPGGAAAGVVATGAHVQVKVEPGADGADSGGGAVADQSAHLEAAAGAHGAGHGGPWRLPALAGVCWLRQPAGGRAWSTAALGAKRLDSSGPEGGGGGGGAGSGENFDSLFSEPAVAGAVPHWARPHQLTAAVLTADGVLTLLWALASKLPNTLSWHRSRPLHVPAPPPVASAAELPDGADGGDAAAPGDGGGGAGGGALPPEWRLAHGSMAALHDGTLSLAVVYDRRRDGVYVYGMRGNPTLGGSPVGQPGAAVPPAAPTATSAAAAPTVSFQAALALREGVSARQCRLHVSGCATRRLFVLGQESVAGAAAGAGDAGAIGSCDREVAPVAVVASFRAESPDAGGGAKAAAGGGVTTWRCERYSQLLLARCGGGDGGGGRCEWEPPAAAGPPDMSLLAGGRALPCHRSVLAARCEALRRRLPPPGADGGGSPVLLELPDADPNATAITLHALYEGGGDGAAAAASALGDLLPAPLAAATAALAEQLGLGELAAAAAAVAAAVGPRLSALRQLHAANGGGSSGGGAPPQQPTISPVPGAPVGPVSEAAVIAAAKHGELPKPLLLRSLQSLFPGPFHLHCGRTKGLTTPAALAQTLRQESLQAVVSLPKEAIMERYRALGLQAQLTDPRVAPHAAARSMWMSFRGPAPPPELHGHVLSQAAVSSRQRQRWRRQRGAALALGASAPLWSHTQGVLPDCLTGAPLPPGTSWSLEGASAGGAVTAAMGPGVGPAGGRHGLPPLLAALQRAWVCCAAPAELGSPWRRARLGQELDLQY
Length970
PositionTail
OrganismGonium pectorale (Green alga)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Chlorophyta> core chlorophytes> Chlorophyceae> CS clade> Chlamydomonadales> Volvocaceae> Gonium.
Aromaticity0.04
Grand average of hydropathy0.005
Instability index52.06
Isoelectric point6.26
Molecular weight96748.07
Publications
PubMed=27102219

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06776
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.64|      18|      19|     185|     203|       1
---------------------------------------------------------------------------
  185-  203 (28.85/10.69)	GGAGSKTGGPQVKvEPGGA
  719-  736 (26.79/ 6.32)	SGGGAPPQQPTIS.PVPGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     317.46|      51|      51|     536|     586|       2
---------------------------------------------------------------------------
  269-  313 (41.85/ 7.24)	AG.GR.AW......STAA....lgAKRldssgPE....GGG.....G.....GG............GAGS.......GENF..............DSLF........SE.....PAV
  314-  388 (41.62/ 7.15)	AG.AVPHW....A.RPHQ....ltAAV.....LT....ADGvltllWALASKLP............NTLS.....WHRSRP..lhvpapppvasaAELPDGAD....GGdaaapGDG
  439-  515 (41.12/ 6.96)	TL.GGSPV....G.QPGA......AVP.....PA....APT.....ATSAAAAPtvsfqaalalreGVSA.....RQCRLHvsgcatrrlfvlgqESVAGAAA....GA.....GDA
  516-  574 (74.45/19.81)	GAiGSCDR....EvAPVAvvasfrAES.....PD....AGG.....GAKAAAGG............GVTT.....WRCERY..............SQLLLARC....GG.....GDG
  575-  626 (70.21/18.17)	GG.GRCEW....E.PPAA......AGP.....PDmsllAGG.....RA.LPCHR............SVLA.....ARCEAL..............RRRLPP......PG.....ADG
  830-  888 (48.21/ 9.69)	AA.ARSMWmsfrG.P.........APP.....PE....LHG.....HVLSQAA..............VSSrqrqrWRRQRG..............AALALGASaplwSH.....TQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.05|      18|      22|     212|     229|       4
---------------------------------------------------------------------------
  168-  184 (27.35/12.35)	WHGQLLLDAG.DSAASGS
  212-  229 (32.66/16.58)	AHVQVKVEPGADGADSGG
  237-  252 (27.04/12.11)	AHLE..AAAGAHGAGHGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.87|      28|      29|     635|     662|       5
---------------------------------------------------------------------------
  635-  662 (49.35/21.08)	LPDADPNATAITLHALYEGGGDGAAAAA
  665-  692 (43.53/17.62)	LGDLLPAPLAAATAALAEQLGLGELAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.96|      11|      51|     893|     905|       6
---------------------------------------------------------------------------
  893-  905 (20.55/11.38)	CltGAPLPPGTSW
  947-  957 (22.41/ 7.49)	C..AAPAELGSPW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.76|      17|     273|     126|     146|      12
---------------------------------------------------------------------------
  113-  133 (30.56/18.50)	LPMAGPGDHVssleWSWPGQR
  137-  154 (25.21/ 6.07)	LSATASGRVV...vWTQPSQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06776 with Med16 domain of Kingdom Viridiplantae
Unable to open file!