<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06669

Description Transcription mediator subunit Med12
SequenceMTSRPPLGVQSRQPQRSVSGSGLSQRPPNPQRSLSQQYLPQSQSPARRTDSLPEQQQQQGAFDLGDAAASRYGAPPKRLGSRLRLELANDGIEHAGFSESPKNLEPLSGSKAFTPSRMMHTNDSSDLGDMSAPASRCQTAEGDPVPMPMPPRRARFVVPAKRSQSAPAPNAPSKRDGRPKAFHLETPAAAPRFPAVGKQEHSAGFADFYAWTGNNAEDQFSDHIIRNGFLDKAPGQNAQDASSAKTTLFPALKHKSGLHTLSTIFLSVLNNRRQSGQISAPSTFKPPPRVTVTDTKREGWLKELANPQISLRRLSRTIPHGIRGKVLLDQCLNKNVPTERAVWLAKCVGANEIRAFKRKGVSGALVMGGELKWIRDWTLCIEQFVDAVVGAFADNDWKAKVQYAIRLATHLYAEHLLDRDHYMDWLVGTLENTTQAKLPMWLLISQIYWNDLLKLRKYGRRLATAVVNHYNSIYEHPDQDILAPLSTQLRTLINSLMLTTPENFVHPQTWSTCHQAIRASVIHDDAKMAMFADVDARNAWFISPSVKSQPAVRTRMVKLLDGMLRNPVMEDTPRQLWTLGENKASLVKTVLEWATSLHRPGIAKVYAATTILRAWSQFDVDITGSILDFINSNPLTESSRQHLIYHLVSELVRTNNFSVARYIQWLIARGGLTDPQDTQTDGPCATRLLVEVPTYALSESMKSLRATLLRRASYSVQEETQNVANAIGFVKHALSITMDDPDPFVARKPRGVKKLAKQLSMSSRALQAEVCTWLCTVFVGELVDARLDGRMVADLPLSKFESIRSLVEASNDYAMLEDILKKLSHSSNPELLASCVDTINLHLPVFAATGSIKTLFQLYYERFRAAMDEIGVGARSLLASLASLGSRLPGFEDVASQLQVSLTRLDRSNAVDASSPLSDNMVTQLQDDESELTEQIEKLASYSSADPPTLERVFQAIIFKLQSCWGKDDGRQRSYCMLLIRLRVFDQQHFDSQMRLWLQHIRKLSKRPQLTQMFPLLVSSGCLPLSILFATAPRSQPQANQAQPGAVGCASIYMQEILQMLMMPLEPNQVMAAEDCYRFRIIQDQARLEHAKDIMSLIRGALAEYAAPRNQQTPVAQPLDDTKTKFQLLELLRILVLLDPAAACQTLSIKSTDANLRALIETLTTKLLVPQPSGNSQKSFEQVLELANEFTLPFCQVKVFLNLSGEDSAAADSAERLQGQLEQLSRAMDNAIAANNIMWTGMLPSLNAEMTQHLKNRAEARFLELFPSPKIQDSTASSTDKEYTMAENLLTVIDAIVRGNSAGRGPAITAALGETLLDIWEIVASSAPEVAPLKEAVLAKWFPLLLSYLTMQTASDFPAAELAKAQSGEIRGRVVLALAGIAQELDYQKHGQYASLSQRAFDVALVTADTLSEDARLQCVRAVKDATSDVRVRYLLSFSATPADTFMLAHREKPPPGMSDRERRQMMLGLGLSGMLPERLSPFTFRRWEILSEPTPNVGENDTSLSLTLFDARKL
Length1515
PositionKinase
OrganismMicrodochium bolleyi
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Xylariomycetidae> Xylariales> Microdochiaceae> Microdochium.
Aromaticity0.07
Grand average of hydropathy-0.254
Instability index50.01
Isoelectric point8.58
Molecular weight168059.33
Publications









Function






Annotated function

Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.


Component of the srb8-11 complex. The srb8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The srb8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.



GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP06669
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     223.61|      60|      60|     647|     706|       1
---------------------------------------------------------------------------
  589-  641 (61.01/36.13)	TVLEWAT....SLHRpgiakvYAATTI.LRAW......SQFDVD..ITGSILDFINSNP..LTESSRQ...
  647-  706 (98.62/63.25)	LVSELVRTNNFSVAR......YIQWLI.ARGGLTDPQDTQTDGP..CATRLLVEVPTYA..LSESMKSLRA
  708-  768 (63.98/38.27)	....LLRRASYSVQE......ETQNVAnAIGFVKHALSITMDDPdpFVARKPRGVKKLAkqLSMSSRALQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.10|      16|      60|      63|      78|       2
---------------------------------------------------------------------------
   63-   78 (29.96/14.28)	DLGDAAASRYG..APPKR
   86-  103 (19.14/ 6.67)	ELANDGIEHAGfsESPKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.93|      25|      58|     395|     420|       5
---------------------------------------------------------------------------
  395-  420 (41.79/28.72)	NDWKAKVQYAIRLATHLYA......EHlLDRD
  450-  480 (38.13/21.61)	NDLLKLRKYGRRLATAVVNhynsiyEH.PDQD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06669 with Med12 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTSRPPLGVQSRQPQRSVSGSGLSQRPPNPQRSLSQQYLPQSQSPARRTDSLPEQQQQQGAFDLGDAAASRYGAPPKRLGSRLRLELANDGIEHAGFSESPKNLEPLSGSKAFTPSRMMHTNDSSDLGDMSAPASRCQTAEGDPVPMPMPPRRARFVVPAKRSQSAPAPNAPSKRDGRPKAFHLETPAAAPRFPAVG
1
197










Molecular Recognition Features






MoRF SequenceStartStop




1) FRRWEIL
2) GRPKAFHL
3) PRRARFVVPAKRSQS
4) RLRLELA
1485
177
151
82
1491
184
165
88