<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06621
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MEDGINVDDLFGEPNSLELGLPAASPIKGLAQCLDEMRLLGCCQKIAWSRMGCIASISPDGLRVIVRHLQCRPSDGKWILGEESPLAPVLEAHNGNQLAHLSWNETGSELAVVDCSGRISIYSISIALNSITGLRQASFDSGDDGNQVVGMMWLNSQRYVHAFHQAAKVNGRWAYSPFRRRPVGPFHPANKGALICVTRAGQIKLIYQNPDSKWAELPAELKNTGYSDRLLTHASMSATQAGILLATFDACQKMCIYRVQICWNPPQWEPTQGKQPGQYPIPSFRFIHCKVDMPSNILNVNPGPDHSDQSMPFLNSVYSLTRLEIMPGQFDSPAGSTGNPWILGVLSKPLHAIHDYPDQQGPPSVIVRWHMQSTPQALHPKFDEVASKTSNVQAKGRMELRRLDDVYSDKYIVSIDLVEHGTVLAVSHDDSSITCYDTRTMTVLNGLDDSTTVTCLAQAGFHYPLETSGLHIAFSPNACVAVTLDSDGHMQLRLMEHSFGSAEGIYDENNFSAAIAALTLAFSRGCGVDFNSDDILMVALAQLSPEAQITFIGEVYRALPINCNFTAEQDKLMSHPYIPRCLSLQAGLGFKGRLKRRNLSSAVPWATIQLRHASVLFAYFFQYNKGGQTESHDPDVLRMVLGNAKWTLDFSHFLLNEIFDMADEFEDVFNDPEAFTQKLKNSSSLPLLILLSSMSRAFLRFICRGLRGVHAGFATANPASLLGDSRIYYTEICQTLESSPVRIDVYEKFLAGVDSAVKHAYQGAGFGDAEKPGPEKELLVNARIPPVLTTAVATLLRQTVPALKSEINRMGIYLGDYSWLGFANDRRTALYRKQREVDILKKCPLRPPLPLGNDGRMAPLKKRRCARCCEVSGDTNLPRSLLSFKMIAKLGLLRSCVCGGMWVLETDNGDLGVRSVSANGNGNRVSQA |
Length | 928 |
Position | Tail |
Organism | Penicillium patulum (Penicillium griseofulvum) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.153 |
Instability index | 41.76 |
Isoelectric point | 6.68 |
Molecular weight | 102260.77 |
Publications | PubMed=26729047
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP06621
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.66| 19| 27| 298| 323| 1
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298- 319 (31.87/27.96) LnvnPGP.DHSDQSM..PFLNSVYS
326- 347 (27.79/ 8.66) M...PGQfDSPAGSTgnPWILGVLS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 263.02| 78| 472| 46| 138| 2
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49- 129 (131.73/89.88) SRMGCIASISPDGLRVIVR....HLQCRPSDGKWilgEESPLAPVLEAHNGNQLAH..LSWNETGSELAVVDCSGRISIYSISIALN
181- 264 (131.29/62.80) RPVGPFHPANKGALICVTRagqiKLIYQNPDSKW...AELPAELKNTGYSDRLLTHasMSATQAGILLATFDACQKMCIYRVQICWN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.19| 12| 27| 695| 706| 3
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695- 706 (22.44/11.89) SRAFLRFICRGL
725- 736 (22.75/12.13) SRIYYTEICQTL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 51.56| 16| 45| 470| 487| 5
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470- 487 (20.83/18.27) LHIAFSpNACvAVTLDSD
518- 533 (30.73/16.06) LTLAFS.RGC.GVDFNSD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.09| 14| 18| 422| 435| 6
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422- 435 (24.99/15.98) TVLAVSHDDSSITC
442- 455 (25.10/16.08) TVLNGLDDSTTVTC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 119.98| 36| 39| 605| 643| 10
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605- 643 (56.11/43.71) WaTIQLRHasVLFAYFFQYNKGGQTESHDPDVLRMVLGN
646- 681 (63.87/39.30) W.TLDFSH..FLLNEIFDMADEFEDVFNDPEAFTQKLKN
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