<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06608

Description Uncharacterized protein
SequenceMTVTLPSIATQPPPPTIGLWDGVVEMTKSAQIKGTDPLIWAVQLSSRLSSAGISMPSTEVAEFLVYHICWSNNVPTAWKFLEKAIALRIAPPMLVLALLSNRIMESIDDVLHLSEKFGIFSGEPGLLLVEFIFAIVWQLLDASLDDEGLLELVPEKKSMWPIKSQEMEIDDHNIGKKQIDRHDRLPIHWGSFIYNLRLLAANSISLRNSKDITPEALLQLTSDSCVLLSQECKSISLQQFHALMASGSLVSSTGPSHGASRSAIWLPIDLFLEDTMVGSVVATTSLLKAHQAISQASWQDAFLGLWIAALRLVEREGDAVEGPIPRLDTCLCLLLCTTTLAIVSIIDEEESAHFEEDEHEQSHMHFRSETRVLGNCRKSLVSSLQQLGDYEGLLIPPPSVTSLANQAAAKAIMFFSGLGVGSGYLDNISLNDMPVNCYTSAYLWPGYVKGHANQIPHTVASQMPGWSSLMNGSPLSPPMVHALVSTPASSLAEIEKIFGIATDGSNAEKIFAATILCGASLTRGWNIQEHTGFFIIKLLSPPVPRDYSGSESHLIASAPLLNVLLVGITSIDCVQIFSLHGLVPQLAGVLMPICEAFGSCSPTVSWPLPTGEHLCPLAVFSNAFTLLLKLWRFDQPPHEHAMKDVTPVGSQLTPEFLLLAXNSQLTSCGNLLKSQKKRKRFLRHCDPSSVRPVFLDSFPKLKLWYQQHQACIASTLSDLKHGTPVYEICDALLNMMFRRTNIGCQSLNPSTSGSSDSSGSEDYTLRLKLPAWDILEAVPFALDAALTACAHGRLSPRLKDLADFLPASMATIVSYLSAETTRGLWKPASMNGTDWPSPATNLSMVEKTINKILAATGVDVPSLSAATLPLPLAALVSLTITYKVDRVSEAVLNLAGPALSTLGTGCPWPCMAIIAALWAQKAKRWTDYLVFSASRTVFHHNNDAIVQLLRACFQSTLGLNSSPIVSNIGGVGNLLGHGFGSHCSGGIAPVAPGLLYLRVHHSVRDVMFMTEEIVSLLMHSVKDIVSTSVPIEKLKNPRTGMIMRYGEVSLSVAMTRIKLAATLGASLVWITGGLNLIQTLIKETLPSWFISVHQSDPTKGSSGGMIGMLKGYALAYFTILSGAFAWGVDSALSASTKRPLILGAHLEFMARALDGKITLGCKKATWRAYVCGFISLMVSCMPMWAREVNVDVLRSVSKGLQKWDEEELAMALLGISGVGAMGAAAEFIVESSM
Length1233
PositionTail
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.07
Grand average of hydropathy0.235
Instability index42.42
Isoelectric point6.15
Molecular weight133364.26
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06608
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     293.17|      72|     380|      55|     144|       1
---------------------------------------------------------------------------
   55-  127 (121.04/59.30)	MP.STEVAEFLV..YHICWSNNVP.......TAWKFLEKAIALRIAPPMLVLALLSNrIMESIDDVLHLSEK.FGIFSGEPGLL
  433-  506 (87.42/36.63)	MPvNCYTSAYLWpgYVKGHANQIPhtvasqmPGWSSLMNGSPL..SPPM.VHALVST.PASSLAEI....EKiFGIATDGSN..
  533-  590 (84.72/53.01)	.........FFI..IKL.LSPPVP.......RDYSGSES..HLIASAPLLNVLLVG...ITSIDCVQIFSLH..GLVPQLAGVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.60|      14|     381|     597|     611|       2
---------------------------------------------------------------------------
  597-  611 (25.02/17.47)	FGS.CSPTVSwPLPTG
  979-  993 (24.58/11.01)	FGShCSGGIA.PVAPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.80|      62|      68|     770|     836|       3
---------------------------------------------------------------------------
  770-  836 (101.51/82.83)	PAWDiLEAVPFALDAALTACahGRLSPRLKdlADFLPASMATIVS....Y...LSAETTRGLWKPA.SMNGTD..WP
  838-  909 (87.30/55.50)	PATN.LSMVEKTINKILAAT..GVDVPSLS..AATLPLPLAALVSltitYkvdRVSEAVLNLAGPAlSTLGTGcpWP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.44|      26|      67|     930|     964|       5
---------------------------------------------------------------------------
  688-  716 (42.16/19.94)	SSVRPVFLDSFPKLklwYQQHQACIASTL
  932-  957 (46.28/35.91)	SASRTVFHHNNDAI...VQLLRACFQSTL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06608 with Med33 domain of Kingdom Viridiplantae
Unable to open file!