<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06599

Description HEL008Cp
SequenceMASSKVRMEGDIQGDKLTQCFDDIMKAATEMMVQQQLKTIQLNSEVAAGFRKSLSKSLGDKVRLFHSILDGVESTLSTASEYLNAVDEEAMKAKQWQKQQEEELRRKQFEEIEKSRKLNGGSAGMQGMGNDQYPNHQQSPLDLKVPSPNRLLSDLDTGNIDAQESNRGVSEKAFSAEFGDLNDMDISMFGGMDGQGDFSLEDFNMGNSNVSSTNKNEIGNHGMNNMSINDRNNGNNVPNNGSAYLTSKPSNGLSKSPKHLQSDSISSMRSNSNNPSGQSSTEQVSKLATQQGSMNPDDYLTLNDFNDLGIDWNTTDDNNELDLNDFNI
Length328
PositionTail
OrganismEremothecium sinecaudum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Eremothecium.
Aromaticity0.05
Grand average of hydropathy-0.883
Instability index42.99
Isoelectric point4.58
Molecular weight36109.10
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06599
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.23|      18|      19|     205|     222|       1
---------------------------------------------------------------------------
  205-  222 (32.52/17.67)	MGNSNVSSTNK.NEIGNHG
  223-  241 (29.71/15.53)	MNNMSINDRNNgNNVPNNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.80|      19|      19|     257|     275|       2
---------------------------------------------------------------------------
  257-  275 (32.91/23.08)	PKHLQSDSISSM..RSNSNNP
  276-  296 (26.89/17.34)	SGQSSTEQVSKLatQQGSMNP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06599 with Med2 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAMKAKQWQKQQEEELRRKQFEEIEKSRKLNGGSAGMQGMGNDQYPNHQQSPLDLKVPSPNRLLSDLDTGNIDAQESNRGVSEKAFSAE
2) MDISMFGGMDGQGDFSLEDFNMGNSNVSSTNKNEIGNHGMNNMSINDRNNGNNVPNNGSAYLTSKPSNGLSKSPKHLQSDSISSMRSNSNNPSGQSSTEQVSKLATQQGSMNPDDYLTLNDFNDLGIDWNTTDDNNELDLNDFNI
89
184
177
328










Molecular Recognition Features






MoRF SequenceStartStop




1) DDYLTLNDFNDLGIDWNTTDD
2) FSLEDF
3) KAFSAEFGDLNDMDI
4) LDLNDFNI
297
198
172
321
317
203
186
328