<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06590

Description Uncharacterized protein (Fragment)
SequenceSFSFAPHRPWRSDSLLEKGTGNTIKVFSGSIRSIEVRAMSNNPQNSGAQALHALHCTSTKDPLVTLLPFWPLFPAQQGQPFMQLASGSQQFRPLGQGMPPGQSQLPQFSQPLQQMSAWPVRPIHTTPSLASPMPFMQPNMTSTSCSPQFQSSATTNNHVSGLGGPGVHLSSSFTVRAPFTVHPFFSCTCRLYMFSTSAFGHAQNNASPQFQPVSQMRTPVAPFGGQHWLPFGTQGAPTVTPVAQTGMQHVTVAFTNQAMSVPNVIQEASSDWQEYTSGDGRRYFYNKRTKNTSWEKPSELMTPLEMSWQLQENNDCSRVDASTVWKEFTTAEGKKYYYNKETKQSKWKIPDELELAREQAEKEASEGSQSGMVPQADAPATFTSSTLEQPFASTSSVEDVSLTISGVASSPVAVKPNTSVGNDPPNLGIDSSSIASEGMETPSPVSQAVNGAPYVLVNTSSSPKTNLENSYSHAVANALDGALVQDIKEAKKGISAAGKVNAAQWEVVDVEPVLYASKQEAKIAFKSLLESANLEADCSWEQAMRVIINDKRYGVLKTLGERKRAFNEFLMEKKKLDVEESRLRQKKAKDEFMKMLEECKELTSSMRWSKAIALVEDDKRYKAVERPADREDLFQNYLVDLKKKGREKAQEEQHQKRLEYRRFLESCGLINVNTQWRKVKDRLEDDERCSRLEKIDRLEIFQEYIRDLGKEEEEQRKLKKEQIKTVERKNRDEFRKMMEEHVVSGILTASTQWRDYFQKVKESVAYQAVASNTCGATAKDLFEDVTEELEKKYRDDKTRVKNAMKAKKVNVAPAWTFKDFKAAMQDAIISPPLSDINLQLVFEDLLERAKEKEKKEGKRRRRLTKDFTELLYGIKEINASSTWEECLQLFEESPAYRSVGDESFARVTFEEYVVSLLEKAENNKYKQEEEKAKKEKREKNKDESNSVDVDVSESYGHKDRERKHHGDDDGCGKNGGHKELEDGEVGEDGEIC
Length992
PositionUnknown
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.08
Grand average of hydropathy-0.750
Instability index51.64
Isoelectric point6.21
Molecular weight111868.31
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06590
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.24|      47|      52|     254|     300|       1
---------------------------------------------------------------------------
  254-  300 (88.93/74.99)	FTNQAMS..VPNVIQ....EASSDWQEYTSGDGRRYFYNKRTKNTSWEKPSEL
  301-  353 (77.31/63.96)	MTPLEMSwqLQENNDcsrvDASTVWKEFTTAEGKKYYYNKETKQSKWKIPDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.91|      21|      21|     716|     736|       2
---------------------------------------------------------------------------
  716-  733 (22.28/12.09)	......................RKLK..KEQ....IKTVERKNRDE
  734-  756 (18.58/ 8.81)	FRK.......................mmEEHvvsgILTASTQWRDY
  757-  796 (20.05/10.12)	FQKvkesvayqavasntcgataKDLF..EDV....TEELEKKYRDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     381.24|      65|      65|     589|     653|       3
---------------------------------------------------------------------------
  482-  520 (29.52/13.22)	..........................ALVQDIKEAKKG..ISAAGKVNAAQWEVVDVEPVLYASK..QE..
  522-  585 (85.17/51.97)	KI..AF.KSLLESANLEADCSWEQAMRVIINDKRYGVL..KTLGERKRAFNEFLMEKKKLDVEES..RLRQ
  589-  653 (106.06/66.52)	KD..EFMKMLEECKELTSSMRWSKAIALVEDDKRYKAV..ERPADREDLFQNYLVDLKKKGREKA..QEEQ
  657-  715 (89.49/54.99)	RL..EYRRFLESCGLINVNTQWRKVKDRLEDDERCSRL..EK.IDRLEIFQEYIRDL...GKE....EEEQ
  862-  929 (71.00/42.11)	RLtkDFTELLYGIKEINASSTWEECLQLFEESPAYRSVgdES.FARV.TFEEYVVSLLEKAENNKykQEE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     209.24|      49|      51|      62|     111|       4
---------------------------------------------------------------------------
   44-  106 (78.44/50.80)	QNSgaQAlhalhctstkdpLVTLLPF......WPLFPAQQGQ......PFMQL....A................SGSQQFRPLGQGMPP.....GQSQLP
  107-  160 (55.89/32.35)	QFS..QP...................lqqmsaWPVRPIHTTPslaspmPFMQPnmtsT................SCSPQF....QSSAT.....TNNHVS
  161-  230 (74.90/46.06)	GLG..GP............GVHLSSS......FTVRAPFTVH......PFFSC....TcrlymfstsafghaqnNASPQFQPVSQMRTPvapfgGQHWLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.50|      28|      51|     384|     411|       5
---------------------------------------------------------------------------
  384-  411 (44.52/26.76)	SSTLEQPFASTSSVEDVSLTISGVASSP
  436-  463 (47.97/29.40)	SEGMETPSPVSQAVNGAPYVLVNTSSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.87|      16|      18|     956|     971|       6
---------------------------------------------------------------------------
  956-  971 (33.11/22.42)	GHKDRERKHHGDD.DGC
  976-  992 (25.76/15.82)	GHKELEDGEVGEDgEIC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06590 with Med35 domain of Kingdom Viridiplantae
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