<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP06585

Description Uncharacterized protein (Fragment)
SequenceMAVSLGTSSSKGLWDSVLELTKKSQNKGSDPLIWAIHLSSQLNSAGVSLPSTDLANLLVSNICWESNNPISWKFLEKALIFNIVPPLLVLALLSTRVIPKRHTQQAAFRLYMELLKRHAFKLKSHVEFQNYPVIMNSIDNVLQLSQIFGVKVIEPGSLVLVFIFSVVWQLVEAALGDEGLLEVTEERKFRWNVPQDMELGDCASYDAKRTEYQEMLQSRNTVMTVELIGLFLQNKRLVLVISYHFNFSFILNHEVLLRPTHWRSFIQDIEVLAVNSSALRSSKAMTPEILLQLISDDRKIVSEETKASYLQEIHTVMSSPAGLSHKVGGSSLWLPLDLVLEDAMDGSQVDTTSAIEIVKRKARFGLLLFLKRNLLLIKNYLLEYEPRFLLTGFVKALQALNGTTWYESFLGLWMAALRLVQRERNPIEGPMPRLDTRLCMLLSVTTLVVSDLIEDEESMPQNKIDRQSTQNCREKRRRDLVSSLQSLGDYQSLLTPPQSIIPAANQAAAKAMMFTSGINVGSSAYFDFINMKDMAINFTGNLHHLIVEACIARNLLDTSAYFWPGYVTGRINQIPHGVPAQVPGWSSFMKGAPITPVMMNALVSEPASSLAELEKVFEIALNGSDDEKIAAATILCGASLIRGWNVQEHSVYFITRLLSPPPPANYLGNDSHLIAHAPMLNVLLVGIAPIDCVQIFSLHGLVPQLAGSLMPICEVFGSCVPNISWTLTTGEEISAYAVFSNAFALLLKLWRFNHPPLEYGVGDVPPVGSQLTPEYLLLMRNSQLVSSGSKNIYEDRNRRRLSAVAKTSCPNPIFVDSFPKLKAWYRQHQACLASTVSGLVHSPVHQIVDSLLNMMFKKINRNQPLTTCVSGSSSSSGPGSEDASLRPKFPAWDILEAVPFVVDAALTACAHGRLSPRELCTGLKDLADFLPASLAIIVSYFSAEVSRGVWKPVFMNGTDWPSPAANLSNVEEHIKNILAATGVNVPTLLAAGPALESLAAGCPWPCMPIVASLWTQKAKKWSDFLRFSSSRTVFLHDNDAVAQLLKSCFTATLGLNNTIISSHGGVGALLGHGFGSNSYGEISPVAPGFLYLRVYRSIRDIMFLREDIISLLMQSVKDIASNGKTPKGKQEIRYGQVSLATALTKVKLAAQLGASILWLSGGQGLVQSMINETLPSWFISAQMTGQGENTGGAVSMLWGYALAYFTVLCGAFAWGVDSSLSASKWRPRFLGSHMEFLASALNGKITLGCDPITWHSYVTGFVSLMVGCMPNWLVEIDIEVLKRLSQGLRQWNEEELALTLLESGGVGTMGAAAELISRTDS
Length1321
PositionTail
OrganismCynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Carduoideae> Cardueae> Carduinae> Cynara.
Aromaticity0.08
Grand average of hydropathy0.142
Instability index47.56
Isoelectric point6.73
Molecular weight145242.37
Publications
PubMed=26786968

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP06585
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.50|      23|      93|    1156|    1179|       1
---------------------------------------------------------------------------
 1156- 1179 (39.66/28.37)	ILWLSGGQGLVQSMINeTLPSWFI
 1252- 1274 (46.84/29.29)	ITWHSYVTGFVSLMVG.CMPNWLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.14|      32|     270|     565|     617|       3
---------------------------------------------------------------------------
  253-  284 (54.51/24.19)	HEVLLRPTHWRSFIQDIEVLAVNSSALRSSKA
  576-  607 (59.63/43.98)	HGVPAQVPGWSSFMKGAPITPVMMNALVSEPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.36|      29|     334|     365|     450|       8
---------------------------------------------------------------------------
  380-  411 (48.05/40.13)	YLLEYeprF..LLTGFVKALQ.ALNGTTWYESFLG
 1200- 1231 (47.31/26.86)	YALAY...FtvLCGAFAWGVDsSLSASKWRPRFLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.66|      34|     334|     417|     450|       9
---------------------------------------------------------------------------
  417-  450 (59.04/32.58)	LRLVQRERNPIE...GPMPRLDTRLC....MLLSVTTLVVS
  747-  787 (50.62/26.95)	LKLWRFNHPPLEygvGDVPPVGSQLTpeylLLMRNSQLVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.48|      36|     357|     457|     494|      10
---------------------------------------------------------------------------
  457-  494 (56.99/43.12)	ESMPQNKIDRQSTQNCREKRRRDLV.SSLQSLGDyqSLL
  816-  852 (59.49/37.99)	DSFPKLKAWYRQHQACLASTVSGLVhSPVHQIVD..SLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.48|      49|     125|     507|     556|      11
---------------------------------------------------------------------------
  507-  556 (84.68/54.55)	AAAKAMMFTS...GINVG.SSAYF..DFINMKDMAiNFTGNLHHLIVEACIARNLL
  630-  684 (77.81/45.76)	AAATILCGASlirGWNVQeHSVYFitRLLSPPPPA.NYLGNDSHLIAHAPMLNVLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP06585 with Med33 domain of Kingdom Viridiplantae
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